SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G07170 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr2:2975565-2978692 FORWARD LENGTH=820 | SoyBase | E_val: 0 | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based process | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0030117 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane coat | SoyBase | N/A | ISS |
| UniRef100_B9SP95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein TORTIFOLIA1, putative n=1 Tax=Ricinus communis RepID=B9SP95_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J4A1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J4A1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g00420 not represented in the dataset |
Glyma01g00420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g001200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g00420.1 sequence type=CDS gene model=Glyma01g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGGGCACAGGGAAATGGGGGTTTGGAGATGAAGCAGAGAATAGTAGGTGCGCTGAACAAGGTTGGGGATCGGGACACGCAGCAAATAGGGATGGAGGAGCTAGATCGAATGGCGCAGGGCTTAAGAGCGGAAGGGATATGGTCCTTCTTGTCATGCATACTAGACTCCGACTGGGAGCAGAAAGCCTCCATCAGAAAGGAGTGCGTAAGACTGATGGGAACGTTGGCCACCTACTACGATGGCCTGGTCCTTCCGCATCTTCCCAAAATGGTTGCAAGCATCGTCAAGCGCCTCAGGGATCCCGACTCTGTCGTCCGGGATGTCTGCGTCAACACGGTTGCTCTTCTCGCCTCCAAATTGGGCCGTGACGGCGAGGACAAGGTGTTTGTTGTTCTTGTCAGGCCCATCTTCGAGGCTCTGGGAGAACAGAATAAGCACGTCCAGTCCTCCTCTGCTCTCTGCCTCGCTAGGATTATCGACAACACTCCCCATCCTCCTCTTTCCCTTTTGCACAAGATGTTGTCCAGGACTCTCAAGTTGCTTAAAAACCCTCATTTTATTGCTAAGCCAGCCCTTCTTGACTTCACCCGGAGCATTATTCTCGCTGGCGGCGCTCCTACTCATAATATTCTCTCCGCTGCTATTTCCAGTATTCAGGATTCCCTTAAACATTCTGACTGGTCCACTCGCAAAGCCGCATCACTTGCACTCGCCGATATTGCTTTGAGCGCTGCTTCTTTCTTGGGATTTTTCAGGGCTTCCTGTCTTCAGTCCCTTGAGTCTTGTCGATTTGACAAGGTGAAACCAGTTAGGGATGCAGTTATGCAAGCGCTCAAGTATTGGACTATTCTTCCCGCTCCCCCAGATACACCCGACCCTTCTGAAACTGGATCCTCCTTAAAAGAAAACATCTGCAGAGGTGACTCCTCTGATCTTAGCAGTACTACTACTGAATCCAGACACATACAAAAAGTCAATATGAAATCAACTATGGGAAGGATCCCTTTCTCTGTTAAAAATTATGCGAGGAACAATCACCAGAAACCAGATGATTGGGATGTTCAAGTTGCAGTCCCCAGACCCCACTCTCTCGTGGAATTCCAGAACAAAGAATCAGAGAGTTGTTCTGTCACTAAGCAGCCATTAGAAACAATGAGTGCTGATGTTACCAGCATGCAGGATGTTGGTTATGAATATGTGCCCATGGATGACAAGCAGGAGTGTTCTTCTGTCTCTAATCCTCCCACTGATAACTTTGAGACCAAGTTTTTATCTGCTTCTCATGACTGTTTTATACAGAAGATGCCAATTGCAAGAAGCCAACGATTTAGTGAGGAAATAACTTCTGATGAACGGGTAAAGATGCAACACCCTACAAGTTCTGATTCTACCGTCACAGAGCCAACTCACCAAACTGCACATGAATGCTGTATGCAAATGGCAAATGAAATGATCTGTATTCAGAATCAACTTTCAGATATTGAAATCAAACAGGCTAACATGATGCACCAATTACAGATGTTTACAACTGGCATAATGGATGCCCTTTCTACAATCCAATCAAGAATAACAGGCTTAGAGAATGTATTTGATAGATTAAGTCAAGAATCTTTGCAAAGAGGAAGACATTCTTATTCAGAAAACTCCAAATTAGGGAGACAGAGTGAAAATGTTGCCTCTCCCAGGTTCTCCATATGCACTCCAACACCAAGGCCATCTGTGGAAATTAATAATAAGCAATCAGACTCTATGTCAGTTAAAAATTCCGAAAGTTGGGAGAAAAAGGCATTTTCAAGGAGCCAACCAAGGATTCATTCTGGAGATAGTTTGGATATGTGGAAAAGTAACAAGGTCAAGGCTACCAGAAAATTTACAGAGAAGGATGTTTTGAACAGCTCATCAAAGGATACCTTACAAATGGGTTCTGTAAAAAATGATGGTATCTTCTCTGCTACCAGAATAACCAATGCCAGAAATGATTGTTCTGAGAGTAATAATAACTACTGGAAGCATGTAAAACGTCTTGTATGTGAAGGGGATCTGAACTCTGCATATAGGGAAGCTTTGTGTTTCAGTGATGAATTTATTCTCGTTGAGCTTTTGAATACAACTGGTCCAGTTATAGAAAGTTTATCTGTGAAGACAATGAATGTTCTTCTTAGTACTTTAGCATCATATCTTCTGGAAGGAAAATTATTTAATACTATAATCCCGTGGCTGCAGCAGATTGTTGAAATGAGTACTATCCATGGACCAAATTGCATTGCTATCTCTATTGAAGCCAAGAAACATCTTTTATCGGCAGTCCAGGAGGCCATGAACCTGCATTTTTTCAGTCATGCAGAAAGAAGGCGTGTGGCTGAATTAGCAATGAAATTACATCATATATGGGGTAAGATCACTGAAAGTTAA
>Glyma01g00420.1 sequence type=predicted peptide gene model=Glyma01g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRAQGNGGLEMKQRIVGALNKVGDRDTQQIGMEELDRMAQGLRAEGIWSFLSCILDSDWEQKASIRKECVRLMGTLATYYDGLVLPHLPKMVASIVKRLRDPDSVVRDVCVNTVALLASKLGRDGEDKVFVVLVRPIFEALGEQNKHVQSSSALCLARIIDNTPHPPLSLLHKMLSRTLKLLKNPHFIAKPALLDFTRSIILAGGAPTHNILSAAISSIQDSLKHSDWSTRKAASLALADIALSAASFLGFFRASCLQSLESCRFDKVKPVRDAVMQALKYWTILPAPPDTPDPSETGSSLKENICRGDSSDLSSTTTESRHIQKVNMKSTMGRIPFSVKNYARNNHQKPDDWDVQVAVPRPHSLVEFQNKESESCSVTKQPLETMSADVTSMQDVGYEYVPMDDKQECSSVSNPPTDNFETKFLSASHDCFIQKMPIARSQRFSEEITSDERVKMQHPTSSDSTVTEPTHQTAHECCMQMANEMICIQNQLSDIEIKQANMMHQLQMFTTGIMDALSTIQSRITGLENVFDRLSQESLQRGRHSYSENSKLGRQSENVASPRFSICTPTPRPSVEINNKQSDSMSVKNSESWEKKAFSRSQPRIHSGDSLDMWKSNKVKATRKFTEKDVLNSSSKDTLQMGSVKNDGIFSATRITNARNDCSESNNNYWKHVKRLVCEGDLNSAYREALCFSDEFILVELLNTTGPVIESLSVKTMNVLLSTLASYLLEGKLFNTIIPWLQQIVEMSTIHGPNCIAISIEAKKHLLSAVQEAMNLHFFSHAERRRVAELAMKLHHIWGKITES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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