Report for Sequence Feature Glyma01g00380
Feature Type: gene_model
Chromosome: Gm01
Start: 170679
stop: 193544
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g00380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G58100 AT
Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23507828-23514863 FORWARD LENGTH=945
SoyBase E_val: 0 ISS
GO:0010584 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen exine formation
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
UniRef100_I1J495 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J495_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q10HZ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10HZ5_ORYSJ
SoyBase E_val: 5.00E-96 ISS
Expression Patterns of Glyma01g00380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g00380
Paralog Evidence Comments
Glyma08g47480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g00380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g000900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g00380
Coding sequences of Glyma01g00380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g00380.1 sequence type=CDS gene model=Glyma01g00380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCCCATACCTTCGCATAGCGAGGAGCAAAGCACTGGGATACATTAGATTAGATAGACTTCTAACTTCAGCTTCAAAGGACAATAACAGTGGTGGTTGGCAAGTAGATGTGGACATGTTAGACGGTCTTTTGTCTAGCCTGGTTGAATACCTTCAACTTGAAAATGCATATAATATTTTTATATTAAATCCCAAGCGTGATGAGAAGAAACCTAAATATGGATATCGGAGAGGTTTATCTGAGCCCGAAATAAACTTGCTAAAGGAGAATAAGAGTTTGCAAATGAAGCTTCTTCAGCCAGAAGGCATTCCTGAAAATATTCTCGCTCTTACTAAGATTCAACGACCGTTGTATTTAAAGCATCCAATGATGAAATTTTCATGGACAAGAACCGAGGACACTGATATTATAGAGTGGTATAATATTTGGCTTGATGCACTAGATAATTTTGGGAGGTTGTATCAAGGGAGAGACACAGCTGAGATCATTGAGGTCAAAGCTTTACAGTTACTAAAAGGGAAGGATCAAGATCTGAAGCTCCATCTGGAAAAAGTATTAAAATCTGGAGACTACAGTGGTTTTCAAGCAGAATGTCTCACGGACACATGGATAGGAAAGGACAGATGGGCATTTATTGATTTAAGTGCAGGCCCCTTTTCATGGGGACCTGCTGTTGGAGGAGAAGGTGTGCGTACAGAAGCAAGTTTACCAAGTGTGGAAAAAACAATTGGTTCAGCTTCAGAAATTTCAGAAGAAGAAGCTGAAGACCGATTGCAAGATGCTATTCAGGAGAAATTTGCTGTATTTGGTGATAAAGAACATCAGGCCATTGATATTCTTTTAGCTGAGATTGATATATATGAGCTTTTTGCTTTTAAACATTGCAAAGGAAGGAAAGTCAAGCTTGCTCTTTGTGAAGAACTCGATGAGAGGATGCGGGATTTGAGAAATGAGCTTCAGTCATTTGAAGGTGAAGAATATGATGAAAGCCATAAGAAAAAGGCCATAGAGGCTTTGAAACGGATGGAGAGCTGGAATCTATTCAGTGACACATATGAGGAGTTCCAAAATTACACAGTTGCGCGTGATTCTTTTCTTGCACATCTAGGTGCAACACTGTGGGGATCTATGAGACATATTGTGTCACCTTCAGTTGCTGATGGTGCCTTTCATTATTATGAGAAGATATCCTTTCAGTTGTTTTTCATGACGCAGGAGAAAGTTAGGCACATTAAACAGCTTCCTGTGGATATGAAGGCTATAATGGATGGGTTTTCCTCATTGATGGTTCCTTCTCAGAAACCAATGTTCAGTCCTCACGTGTTGCCTTTGTCAGAGGATCCTGCCTTAGCAATGGCCTTTGCAGTTGCACGACGAGCAGCTGCTGTGCCTTTACTACTTATCAATGGAACCTACCGAAAGACAGTTCGTACATATCTTGATTCTTCTATTCTGCAGTATCAATTGCAAAGGCTGAATAAACATGGTTCTCTTAAAGGAAGGCATGTGCATTCCAGGTCTGTGCTAGAGGTTCCAGTCTTTTGGTTCATTTACAGTGAACCACTTTTACTCGATAAATATTTTCAGGCAAAAGCACTGTCTGACATGATTATTGTCGTTCAGTCAGAGCCCTCGTCCTGGGAAAGCCATCTACATTGTAATGGGCATTCACTTCTGCTGAACTTGAGGCAGCCTATAAAAGCTGCAGTCGCTGCTACTGCTGAGCATCTTGCTGGTTTGCTTCCCCTTCATCTTGTCTATGGACAGGCCCATGAGACTGCAATTGAGGACTGGTTATGGTCAGTAGGATGCAACCCTTTTTCCATTACATCACAAGGATGGCACCTTTCACAGTTCCAGTCTGATTCAATTGCTCGAAGTTATGTCATCACTACCCTTGAAGAATCAATACAACTGGTTAATTCTGCCATTCATCTTCTGCTAATGGAACGAACTACTGAAAAAACATTTAGGATCTTCCAGTCTCAGGAGCACGAGCTTGTTAACAAGTACAATTATGTTGTTAGCCTTTGGAAAAGGGTATCAACTGTCACGGGAGAATTGCGCTACAGTGATGCATTGAGGCTACTAAACACCTTGGAGGATGCATCCAAAAGGTTTGTTGATCAAGTTAATGTGACTCATGCCCTTCTCCATCCAATTAACTGCACAAGAGAGAGAAAAATACATATGGTGTTTGATATGACGACAATTCCTGCTTTCTTGATTGTTCTAGGGTGCCTTTATATGGTATTGAGGCCAAGGCGACCAAAACCCAAGATTAATTGA
Predicted protein sequences of Glyma01g00380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g00380.1 sequence type=predicted peptide gene model=Glyma01g00380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIPYLRIARSKALGYIRLDRLLTSASKDNNSGGWQVDVDMLDGLLSSLVEYLQLENAYNIFILNPKRDEKKPKYGYRRGLSEPEINLLKENKSLQMKLLQPEGIPENILALTKIQRPLYLKHPMMKFSWTRTEDTDIIEWYNIWLDALDNFGRLYQGRDTAEIIEVKALQLLKGKDQDLKLHLEKVLKSGDYSGFQAECLTDTWIGKDRWAFIDLSAGPFSWGPAVGGEGVRTEASLPSVEKTIGSASEISEEEAEDRLQDAIQEKFAVFGDKEHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMRDLRNELQSFEGEEYDESHKKKAIEALKRMESWNLFSDTYEEFQNYTVARDSFLAHLGATLWGSMRHIVSPSVADGAFHYYEKISFQLFFMTQEKVRHIKQLPVDMKAIMDGFSSLMVPSQKPMFSPHVLPLSEDPALAMAFAVARRAAAVPLLLINGTYRKTVRTYLDSSILQYQLQRLNKHGSLKGRHVHSRSVLEVPVFWFIYSEPLLLDKYFQAKALSDMIIVVQSEPSSWESHLHCNGHSLLLNLRQPIKAAVAATAEHLAGLLPLHLVYGQAHETAIEDWLWSVGCNPFSITSQGWHLSQFQSDSIARSYVITTLEESIQLVNSAIHLLLMERTTEKTFRIFQSQEHELVNKYNYVVSLWKRVSTVTGELRYSDALRLLNTLEDASKRFVDQVNVTHALLHPINCTRERKIHMVFDMTTIPAFLIVLGCLYMVLRPRRPKPKIN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
