SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03990 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:1033788-1034591 FORWARD LENGTH=267 | SoyBase | E_val: 7.00E-153 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG1454 | KOG | Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF13 | Panther | BIPHENYL HYDROLASE-RELATED | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_G7ICD6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sigma factor sigB regulation protein rsbQ n=1 Tax=Medicago truncatula RepID=G7ICD6_MEDTR | SoyBase | E_val: 3.00E-178 | ISS |
| UniRef100_I1J464 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J464_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma0092s00240 not represented in the dataset |
Glyma0092s00240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g089000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma0092s00240.1 sequence type=CDS gene model=Glyma0092s00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCACTTCCATTCTCGACGCCCTGAACGTCCGCGTGGAAGGTTCCGGCGATAAGTACCTTTTCCTGGCCCACGGCTTCGGCACAGACCAATCCGCGTGGCAGCGCGTGCTCCCTTACTTCACCCGCAACTACAGCGTCATTCTCTACGACCTCGTCTGCGCCGGCAGCGTCAACCCCGACCACTTCGACTACCGCCGCTACACCACCCTCGACGCCTACGTCGACGACCTCCTCAACATCCTCGACGCCCTCCGCGTCCCCCGCTGCGTCTACGTCGGCCACTCCATCTCCGCCATGATCGGCATGCTGGCCTCCATCCGCCGCCCCGACCTCTTCTCCAAACTCATCCTCATAGGCGCCTCCCCTAGATTCCTGAATGACAAGGACTACCACGGGGGATTTGAGCAGGGAGAGATCGAGCAGGTGTTTTCGGCAATGGAGGCGAACTACGAGGCCTGGGTGAACGGTTTCGCGCCGCTGTCGGTGGGAGCGGATGTTCCCGCGGCGGTGCGGGAGTTTTCCCGGACGCTGTTCAACATGAGGCCGGACATCTCGCTGTTCGTGTCGCGGACGGTGTTCCACAGCGACCTGAGGGGGATTCTGGGTCTGGTTAACGTCCCCTGTTGTATTATGCAGACGGCACGTGACATGTCCGTGCCTGCCAGCGTGGCGACCTACATGAAGGACCACATCGGCGGAAAGAGCAGCATCCAGTGGCTGGACACGGAGGGCCACCTCCCGCACTTGAGTGCTCCTTCATACCTGGCTCGCCAGCTTGAGATTGCGCTTTCCCAGTAG
>Glyma0092s00240.1 sequence type=predicted peptide gene model=Glyma0092s00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTSILDALNVRVEGSGDKYLFLAHGFGTDQSAWQRVLPYFTRNYSVILYDLVCAGSVNPDHFDYRRYTTLDAYVDDLLNILDALRVPRCVYVGHSISAMIGMLASIRRPDLFSKLILIGASPRFLNDKDYHGGFEQGEIEQVFSAMEANYEAWVNGFAPLSVGADVPAAVREFSRTLFNMRPDISLFVSRTVFHSDLRGILGLVNVPCCIMQTARDMSVPASVATYMKDHIGGKSSIQWLDTEGHLPHLSAPSYLARQLEIALSQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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