SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24090 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr4:12512742-12514467 FORWARD LENGTH=308 | SoyBase | E_val: 4.00E-84 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B1XMJ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Conserved hypothetical membrane protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XMJ8_SYNP2 | SoyBase | E_val: 3.00E-08 | ISS |
| UniRef100_C6TML9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TML9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma0048s00250 not represented in the dataset |
Glyma0048s00250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g286200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma0048s00250.1 sequence type=CDS gene model=Glyma0048s00250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATACTTGCACTATTATTATGAATTCCATGCCAGTTCCTTCTCCTTTGTTGATAAAGTCCTTTAAAACATTTCCATCGTTCAAATGCTGCAGCAAGAGCTCAGATGAGAAGGGAAGTGAAGATGTGAAGGACACATTATCTGGGGTGGTGGACGAGCAAGTTGAAGAGTTCTTGAGTAGAAAAGAGAACAAGGTTTTGCTGGATGGCTTAGAGAAGGCGTCGCAGAGGGTTGAGATGGCTAAGAGAGAACTTGCTCTGATCCGAAAACAAGAATTTGCTGTCAAGCAGTTGAAGGATTACGTCAACCAGCTTGAAAGCAAAGTTTTCGAGATTGGAGAATGTCAAAGAGACATATCAGAGGCAAAAGCCTTGGTGGAGGAAGCAGAACGCTCTCTGTTGGTAAATGTGGGAGGTCCTGAAAATGGCAGTACATCCATGGGGATGAAAAGTGAAGACATCGATAGAGATGAAGAGAGATGGGAGTCAGTAAAAGCAGCATCAATTTCTGCCCTTGTTGGTACTTTTTCAGGGCTCCCCATATGCTTCACTCAGGTCACCAACACAACTCAGCTGCTTCTCCCTTTAGCAATCAACTTCATTTGCTGTGCATTGTTTGGAGTGACTTTTCGGTACACTATAAGGAGAAATTTGGATGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCTTCTTGTCACATGCCCAGGAAGGGACAATTTATTTGTCTGAGAATCTTTTGATTTTTGTTTCTGCTGCTGTTGCTCTAGATTACTGTTTAAAGACAAGGCTTTTGAGCCCTTTTCCAATTGATTGA
>Glyma0048s00250.1 sequence type=predicted peptide gene model=Glyma0048s00250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNTCTIIMNSMPVPSPLLIKSFKTFPSFKCCSKSSDEKGSEDVKDTLSGVVDEQVEEFLSRKENKVLLDGLEKASQRVEMAKRELALIRKQEFAVKQLKDYVNQLESKVFEIGECQRDISEAKALVEEAERSLLVNVGGPENGSTSMGMKSEDIDRDEERWESVKAASISALVGTFSGLPICFTQVTNTTQLLLPLAINFICCALFGVTFRYTIRRNLDDVQLKTGVAAAFGVVKGLATLGGGPLPEPNIESFLSHAQEGTIYLSENLLIFVSAAVALDYCLKTRLLSPFPID*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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