SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55325 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerase II transcription mediators | chr1:20637594-20647714 FORWARD LENGTH=2001 | SoyBase | E_val: 0 | ISS |
| GO:0006357 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0040034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of development, heterochronic | SoyBase | N/A | ISS |
| GO:0090213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of radial pattern formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| PTHR12950 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12950:SF18 | Panther | JGI | ISS | ||
| UniRef100_G7J9L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit n=1 Tax=Medicago truncatula RepID=G7J9L8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EE03 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EE03 related cluster n=1 Tax=unknown RepID=UPI000233EE03 | SoyBase | E_val: 0 | ISS |
|
Glyma0018s50 not represented in the dataset |
Glyma0018s50 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g000100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma0018s50.1 sequence type=CDS gene model=Glyma0018s50 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGACAAATGTTTTCAAAATCGGAAGTATGCATCAGATATCTTGGTTTCAGTTTCTTCCTCATGAACCTGACCTGAACCCTCTACCTGACAAAAGTGTTAAAGTGGACCAAAAGGATGCTGCAATGTTACTGGTGCTTTCATCACATCTGCAACTTCAGAAGGAGGGGTTTCTCAGCACATGGACCAATTCCTTTGTTGGACCTTGGGATCCATCCCAGGGATTGCATAATCCAGATGAAAAGATTAAGCTGTGGCTTTTTCTTCGGGGGCGTCATTCATCAGTTGTTGAGACTGCTCAGACAGCAGTATCTGGATTAAGAGTTGTTGCTTCTGGGCTTTGGTTGGCTCCTGGGGATTCAGAAGAGGTTGCAGCTGCTCTCTCTCAGGCTTTAAGGAATTGTATAGAAAGAGCTTTGCTTGGGCTTTATTACATGAGATTTGGAGATGTATTTTCAAAGTTTCATCAATTTCAAAGAGAAGAAATTTTCAGAAGAGGACAGCCTGCAGTTGAATTTGTCTTTGCTGCAACTGAGGAGGCAATCTTCATACATGTCATAGTATCCTCAAAGCATATCCGAATGCTTTCCACAGCTGATCTGGAAAAAGTATTAAAACATTCTATGGAGTCGACATATAGACTTCCAGTAATTGTTTCTCCGCATGGAATTCGTGGCAGCTTGACTGGTTGTTCTCCTAGTGATCTTGTCAAGCAAAGCTATTTCAGTTCTACCAAATTTAGGGTGTCCAATGGAATTATAGGTCTCCCATATCATGTTTCCCAGGGTGTTGGTTGCCAGCTGAGGGGGCAGAATTGTTATGTTGAAGTAAGTCTTGGCTTCCCTAGATCTGGAACTGACAACACGTTGCAGCCAAACAAAAATAGTGTCAGGAATTTACCCAAACTTCATGTTGCTGAATCTCCTGTTGTGGGACGAAGTGATCACAAGGGACCACCAGATCATTTGTTGGATTACGATAAAACGTTTCTCTATCCAGCTGAGGCAGTGCTTGTGCCAGTCTTACAAACATCATTAGCAAGGTCTTCCTTGAGAAGATTTTGGCTGCAGAATTGGATGGGACCATCCCTGCCTGGTTCCTCTTCCTTTATTCACTGTGCTGGTAATGTGGATTGTACTGAAGATCCTTGGACTGAAATCAATGGAACCCGCACACAAAGTAGTTATGATAGTAGTAGCAATAGCAATAATAGCAGTATTAGTAGCTTAAGTGCCAGCTCTAGTGATAGTGATTACAAGACTACAGGACCAAGTGAACTAGAGGCAGATGCTGATTCTTTGACGTGTAGACAGTCTATGGTATCTTCTGCTGATCAGTTGGACAGTGATGGCCCCAAATTGGGCTCTAAGCGGTCTCGAACAGGGGTGACAGAGTTGTTAAGTACAGCTACAAACATTCCTGTGCAAGATGCTTACATGTCTGATTTTGGTTCCATGGAAGTGAACAATTCAGCCATTACAGGAGTAGGAAATGAGCCAATTGGGTCTTACTGGGACTGGGATGATGATGATAGAGGCATGGAAATGGATATTCAAGCCCTTCTATCAGAGTTTGGTGATTTTGGTGACTTCTTTGAAAATGATGTTTTACCTTTTGGAGAGCCCCCAGGAACTGCAGAATCTCAGGCACTCATGCTTTCTGCCCCGGATTGTGGAGATGTCAACAGCAGTCCAGGTGGTGTGATAGATGTTCCAGATCAAATACTTTTGCCTGTTGGCTTTGCTTCCTTTGAGAGCTTTAACCCCCCTCCTTCAACATCCATAGAAGAATGTCTTAACAAAAGTCAAGATAACTTGAATAACTCCATGTCTTTGGGTCCAACCAATCAAAATCAACTGTTGTATACAAGGGAGTTTGATCATATAATGAAAGCTGAAGCAATGATGACATTCGCTCCTGAATTTGGAGCTGTTGATACCCCTACTTGTGAGTTCTCCACAACATTATTCAGAAGCCCATATTTTCCGAAATCTCGAAAAGCAAAGAGTTCAACTTCAAGTTCAAGCAATTACTTATATGGTGCAGCACCGCCCACTTCTACTTGCACTGAAGGATCAGAGGGGAAGAATGGAAAGTCCGTCAACACAAAAACAGGTTCTGGAAAACATGATGCTAGTACTATGAGTCTCCACTCAAAATATTACTACACTTTTGTGGAAAGTAGGAAAGAAAAAAATGATAAAAATCCTGCCACTTGCAATGATAACAGCATAACTAAATCTGAGGGGATGCCACCACTCTCAAACATTGGTTCTAATGCTATTGTCAAGTCTGCCATAAGGAAGACAACTGATTGCACACATGAAGCAGAGCAGTTCCTTCTATCTGCAAAAACTTTGTTGGCAACTGATATCACATGTATTATGTTGCAAGCTTCCATGTGCAGGTTACGCCATATTCTCTTGTCTTCAGGTAACCTAATGCCTGCTGGTTTGAGTAGGTCAACTGGGGTTTCATTTTTGAATCAGCTTCCTAGTGATCCAAGTATGACAACAGACAACATATCTGGCAAGTATGATGTTAAGAAGAAAGAAAATATACCAATTAGAATTGCAGGTGATATTGATGGAGGAATGCTTGATGGGCACCTTAATGCCCCTGTTGGTGTTTGGCGCACATTAGGAGCTTCCAAAGTTGTAAAACCTTCAAATTCACCTAACATGGAAGTTGTTCCTTCCTTTCCTCATAATTCTTTCAATGAAGAAGGTATCCTTTCTTATGGTCAAAGGAAACCACTTCAGGAGCTTCTTGATGGGATAGCATTACTTGTCCAACAAGCTATTTCCTTTGTTGATCTGGCCTTGGATGTGGATTGTGGTGATGGTCCTTATGGTTTGCTTGCAATGCAAGAACAGTGGAGGCGTGGATTTTGTTGTGGGCCTTCCATGGTCCATGCTGGCTGTGGGGGAAGTCTTGCCTCTTCTCATTCATTGGACATTGCTGGCTTGGAGTTAGTGGATCCACTTTCTGCTGATGTTCATGCATCCACTGTCATCAGTTTGCTGCAGTCTGACATAAAAACAGCTTTGAAATCTGCTTTTCCCAATTTGGAAGGGCCATTATCTGTAACTGATTGGTGCAAAGGACGCAATCAATTGATTGATACTGGAAGCGTAGTTGATGGAGTTTCTGCTGAATCCAACATTAATGAATGTAGGGATTCTTCAGAACCAATGAGTCCATCTCAATCATCTGTTGGTGGATCTTCCAGTATTAAGGTTTCCAACATGATGGATAAGGTGGATGAGACTTCTCAAAGGAGATCTGGCCAAGATTTATGCAGCACAGAGTCAGAGCAGCAAACATGTTCCCGGCTAAAACCTACTCTCATTGCTCTTCCGTTTCCTTCTATACTTGTAGGGTATCAGGATGATTGGCTCAAGACATCAGCAAACTCTTTGCAGCACTGGGAGAAGGCTCCTCTAGAGCCCTATGCTCTACAGAAACCTATTACGTATCATGTTGTATGTCCCGACATTGATCCCCTTACTTCTGCTGCTGCTGATTTTTTTCAACAACTAGGAACAGTGTATGAGACATGCAAGCTAGGTACTCATTCACCTCAAGGCTTGGGGAATCAGATAGAGATAGAGTCTGCAAAGTTGTCATCTTGTGGTTTTGTTTTACTTGATTGCCCCCAATCAATGAAGATTGAGAGCAGCAATGCATCTCTTGTTGGTTCAGTAAGTGATTATTTTTTATCTTTATCTAATGGTTGGGACCTGACTAGTTATCTCAAGTCTCTTTCAAAGGCACTTAGAGGTTTGAAAATTGGCTCTTGCTTTTCTACAAACCCCAGCGAAGGAAGTAACAGCTCATGCTTGGTAATCTATGTGGTGTGCCCATTTCCTGATCCCACTGCAATTTTGCAAACTGTAATTGAGTCTTCTGTTGCCATTGGATCGGTTGTCCAACAGTCGGATAGAGAGAGGAGATCTAGCTTGCATAGTCAGGTTGTGAAGGCATTAAGTGGCTTGGCCACTGTCGATGAAGCTTCAGCGTCTAATATCCTTGTGCTTTCTGGGTTTAGTATTCCAAAATTGGTCTTGCAGATAGTTACAGTGGATGCCATTTTCAGAGTCACAAGCCCATCTGTTAGTGAGCTTGTCATTTTAAAAGAGACTTCCTTTACTGTATACAGCAAGGCTCGTCGCATTTCACGTGGAATCTCTAGTGATTTTGCTCAATCTGCATTTTCTAGTAGATCTCATTCTGGTTTGACACAAATGCCTTCTCCCATCTCTGGGATGTGGAAAGACTGTGTTGGTCCTCGAATGGCAGGACATTCTCTTCCAAGAGAGGGTGACATTGATGCTAGCTTGAGGCCTGGTACTTGGGATAATTCTTGGCAACCAACAAGGACTGGGGGGTTAAGCTGTGATCCAAGTAGAACTGGGGATAATTTTCTTCATGATGAAATTCGTTACATGTTTGAACCCCTTTTTATTCTCGCAGAACCAGGTTCTCTTGAAAATGGTATTTCAGTTATTGGTAGTCCCACTTCAGAATCTTCCAAGGCATTGGCAGATGACAGTAGTGGTAACTATGTACAGAGTACAAGTACAGCAGGAAGTGTGGAGTCTGCTTCAAGCACTGATGCATCTGGGTCCGATCCAAAGACTCCTCCAAGCCTACATTGTTGCTATGGATGGACTGAGGACTGGCGTTGGCTCGTGTGCATCTGGACAGACTCAAGGGGAGAATTGCTGGACTGCAATATTTTCCCCTTTGGTGGAATAAGCAGCAGGCAGGATACAAAGGGTCTGCAGTGCCTATTTGTTCAAATTCTTCAACAAGGTTGTCTGATACTTCAATCTTGTGATCCTGGCCTTGCAAAGCCTCGAGATTTTGTGATAGCACGCATTGGAGGTTTTTATGAGCTCGAGTACCTTGAGTGGCAGAAAGCCATTTATTCAGTTGGTGTATCTGAGATGAAGAGATGGCCTCTGCAATTGCGGAAATCTATGTCTGATGGGATGTCTGCAACTAGTAATGGTTCTTCTTTGCAACAATCAGATATGAGTTTGATCCCAGAAAGAACTCTTCCTTCCTCACCGAGTCCTTTGTACAGCCCTCATACCAAATCCCCTGGTTTTATGAAAGGCAGTTTAGGGCAACCTACTGCAAGAAAGCAACTTATCGGTGGACATTCTATGGTTGACAATTCTAGGGGTTTGCTTCATTGGGCGCAAAGCATTAGTTTTGTTGCAGTTTCCATGGACCATACTTTACAACTAGTTCTCCCAGCAGATTCATCAACTCCTGGTTACATAGAAGGTTTCACTCCAGTTAAGTCTCTTGGTTCTACGTCTTCTGCATATATTCTAATTCCTTCTCCTAGCATGCGGTTCCTTCCTACAACAGTTCTTCAACTCCCAACATGCCTCACAGCAGAGTCGCCACCACTAGCTCATCTGCTTCACAGCAAGGGTTCTGCTCTTCCTCTCTCTACTGGATTTGTGGTTTCAAAAGCTGTACCTTCCATGAGGAAGGACTATAGAGCCAACCAAAAAGAAGAATGGCCCTCTGTACTTTCAGTGAGCCTCATTGATTATTATGGAGGTACTAACATCCCCCAAGAGAAGATTGTCCGAGGAATTAACAAGCAAGGTGGTAGAAGTTTAAGCTGGGAAGCTAAAGATTTTGAAATTGAGACCCACTTGGTTCTGGAGTCTCTTGCAGCAGAGCTTCATGCCTTGTCATGGATGACAGTGAGCCCCACATACTTAGAGCGGCGAACAGCACTTCCTTTCCACTGTGACATGGTTCTAAGACTAAGAAGACTTCTTCACTTTGCTGATAAAGAGCTCTCCAAGCAGTCCGAGAAATCTTGA
>Glyma0018s50.1 sequence type=predicted peptide gene model=Glyma0018s50 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWTNVFKIGSMHQISWFQFLPHEPDLNPLPDKSVKVDQKDAAMLLVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLRGRHSSVVETAQTAVSGLRVVASGLWLAPGDSEEVAAALSQALRNCIERALLGLYYMRFGDVFSKFHQFQREEIFRRGQPAVEFVFAATEEAIFIHVIVSSKHIRMLSTADLEKVLKHSMESTYRLPVIVSPHGIRGSLTGCSPSDLVKQSYFSSTKFRVSNGIIGLPYHVSQGVGCQLRGQNCYVEVSLGFPRSGTDNTLQPNKNSVRNLPKLHVAESPVVGRSDHKGPPDHLLDYDKTFLYPAEAVLVPVLQTSLARSSLRRFWLQNWMGPSLPGSSSFIHCAGNVDCTEDPWTEINGTRTQSSYDSSSNSNNSSISSLSASSSDSDYKTTGPSELEADADSLTCRQSMVSSADQLDSDGPKLGSKRSRTGVTELLSTATNIPVQDAYMSDFGSMEVNNSAITGVGNEPIGSYWDWDDDDRGMEMDIQALLSEFGDFGDFFENDVLPFGEPPGTAESQALMLSAPDCGDVNSSPGGVIDVPDQILLPVGFASFESFNPPPSTSIEECLNKSQDNLNNSMSLGPTNQNQLLYTREFDHIMKAEAMMTFAPEFGAVDTPTCEFSTTLFRSPYFPKSRKAKSSTSSSSNYLYGAAPPTSTCTEGSEGKNGKSVNTKTGSGKHDASTMSLHSKYYYTFVESRKEKNDKNPATCNDNSITKSEGMPPLSNIGSNAIVKSAIRKTTDCTHEAEQFLLSAKTLLATDITCIMLQASMCRLRHILLSSGNLMPAGLSRSTGVSFLNQLPSDPSMTTDNISGKYDVKKKENIPIRIAGDIDGGMLDGHLNAPVGVWRTLGASKVVKPSNSPNMEVVPSFPHNSFNEEGILSYGQRKPLQELLDGIALLVQQAISFVDLALDVDCGDGPYGLLAMQEQWRRGFCCGPSMVHAGCGGSLASSHSLDIAGLELVDPLSADVHASTVISLLQSDIKTALKSAFPNLEGPLSVTDWCKGRNQLIDTGSVVDGVSAESNINECRDSSEPMSPSQSSVGGSSSIKVSNMMDKVDETSQRRSGQDLCSTESEQQTCSRLKPTLIALPFPSILVGYQDDWLKTSANSLQHWEKAPLEPYALQKPITYHVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQGLGNQIEIESAKLSSCGFVLLDCPQSMKIESSNASLVGSVSDYFLSLSNGWDLTSYLKSLSKALRGLKIGSCFSTNPSEGSNSSCLVIYVVCPFPDPTAILQTVIESSVAIGSVVQQSDRERRSSLHSQVVKALSGLATVDEASASNILVLSGFSIPKLVLQIVTVDAIFRVTSPSVSELVILKETSFTVYSKARRISRGISSDFAQSAFSSRSHSGLTQMPSPISGMWKDCVGPRMAGHSLPREGDIDASLRPGTWDNSWQPTRTGGLSCDPSRTGDNFLHDEIRYMFEPLFILAEPGSLENGISVIGSPTSESSKALADDSSGNYVQSTSTAGSVESASSTDASGSDPKTPPSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTKGLQCLFVQILQQGCLILQSCDPGLAKPRDFVIARIGGFYELEYLEWQKAIYSVGVSEMKRWPLQLRKSMSDGMSATSNGSSLQQSDMSLIPERTLPSSPSPLYSPHTKSPGFMKGSLGQPTARKQLIGGHSMVDNSRGLLHWAQSISFVAVSMDHTLQLVLPADSSTPGYIEGFTPVKSLGSTSSAYILIPSPSMRFLPTTVLQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVPSMRKDYRANQKEEWPSVLSVSLIDYYGGTNIPQEKIVRGINKQGGRSLSWEAKDFEIETHLVLESLAAELHALSWMTVSPTYLERRTALPFHCDMVLRLRRLLHFADKELSKQSEKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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