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Report for Sequence Feature Glyma.U021900

Feature Type:gene_model
Chromosome:scaffold_21
Start:3519949
stop:3522670
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Proteins Associated with Glyma.U021900
LocusGene SymbolProtein Name
APX1 ascorbate peroxidase 1, cytosolic
APX-1 Ascorbate peroxidase 1

Expression Patterns of Glyma.U021900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.U021900 not represented in the dataset
Glyma.U021900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.U021900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma11g15680 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.U021900
>Glyma.U021900.2 sequence-type=transcript locus=Glyma.U021900 ID=Glyma.U021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCGATAACAATGATCCATCGCCTTTTACAATCCCATCCTCTTTCTCCTCACTGGTCAGTCATAAAGCCTTTCCTCACCTACCCCACCGTGCAATTTACACGTGCACACCCATCCCAACCGTCAATTTCCCAAATCGACAACAACCGCATGATCAAAAAAATCCAACGGCCCATGATCACCTACTAGAACTTTCTCCGCTTCTCCCTATTATATCTACCTTCCCCCCTCCCATTGCTGGCTTGTGCTCTGCTCGTGCCTCTAGGGTTATCATTTCTCCATTTCCATTTTCTCTCTCACTTTTCAAGAATCGTAAGCTATGGGAAAGTCTTACCCAACTGTGAGTGCTGATTACCAGAAGGCCGTTGAGAAGGCGAAGAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGATGCGCTCCTCTAATGCTCCGTTTGGCATGGCACTCTGCTGGAACCTTTGACAAGGGCACGAAGACCGGTGGACCCTTCGGAACCATCAAGCACCCTGCCGAACTGGCTCACAGCGCTAACAACGGTCTTGACATCGCTGTTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCAGTTGGCTGGCGTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCCGATGCCACTAAGGGTTCTGACCATTTGAGAGATGTGTTTGGCAAAGCTATGGGGCTTACTGACCAAGATATCGTTGCTCTATCTGGGGGTCACACTATTGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGTCCCTGGACCTCTAATCCTCTTATTTTCGACAACTCATACTTCACGTGGGTATTTTCACGTATCCAGCACGGCCTTTTGAACACTCTTCTTCTTCTTTACTATTTGAAATTTCCGTTCTAATTTTTTATCTGTCCTAAATTTTTTTAGGGAGTTGTTGAGTGGTGAGAAGGAAGGTCTCCTTCAGCTACCTTCTGACAAGGCTCTTTTGTCTGACCCTGTATTCCGCCCTCTCGTTGATAAATATGCAGCGGTATGTGTATTCTCTTAATTTTTCGCATAACATTGATTTTTTGAATGTTGAACATTTAGTGATGTTTGATTTGCTAATGATTTCAGGACGAAGATGCCTTCTTTGCTGATTACGCTGAGGCTCACCAAAAGCTTTCCGAGCTTGGGTAAGTATTGATATTTCATACATTTTAATTTATAACTATGATTTTATGAAGCTTTTCTCTTAGTTTTACTTGACACGTTTTAC

>Glyma.U021900.3 sequence-type=transcript locus=Glyma.U021900 ID=Glyma.U021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCGATAACAATGATCCATCGCCTTTTACAATCCCATCCTCTTTCTCCTCACTGGTCAGTCATAAAGCCTTTCCTCACCTACCCCACCGTGCAATTTACACGTGCACACCCATCCCAACCGTCAATTTCCCAAATCGACAACAACCGCATGATCAAAAAAATCCAACGGCCCATGATCACCTACTAGAACTTTCTCCGCTTCTCCCTATTATATCTACCTTCCCCCCTCCCATTGCTGGCTTGTGCTCTGCTCGTGCCTCTAGGGTTATCATTTCTCCATTTCCATTTTCTCTCTCACTTTTCAAGAATCGTAAGCTATGGGAAAGTCTTACCCAACTGTGAGTGCTGATTACCAGAAGGCCGTTGAGAAGGCGAAGAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGATGCGCTCCTCTAATGCTCCGTTTGGCATGGCACTCTGCTGGAACCTTTGACAAGGGCACGAAGACCGGTGGACCCTTCGGAACCATCAAGCACCCTGCCGAACTGGCTCACAGCGCTAACAACGGTCTTGACATCGCTGTTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCAGTTGGCTGGCGTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCCGATGCCACTAAGGGTTCTGACCATTTGAGAGATGTGTTTGGCAAAGCTATGGGGCTTACTGACCAAGATATCGTTGCTCTATCTGGGGGTCACACTATTGTATGTTATGATTTTGAATTTGTTGTTTTAGCCACATTGCAAAATTATGCTGCTATTATATTGAGAAAAAATGTCACATCTAAACTTTTGTACCACTACTGGTGTAATTTTGCCAAATGTATTTTGTAGGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGTCCCTGGACCTCTAATCCTCTTATTTTCGACAACTCATACTTCACGTGGGTATTTTCACGTATCCAGCACGGCCTTTTGAACACTCTTCTTCTTCTTTACTATTTGAAATTTCCGTTCTAATTTTTTATCTGTCCTAAATTTTTTTAGGGAGTTGTTGAGTGGTGAGAAGGAAGGTCTCCTTCAGCTACCTTCTGACAAGGCTCTTTTGTCTGACCCTGTATTCCGCCCTCTCGTTGATAAATATGCAGCGGTATGTGTATTCTCTTAATTTTTCGCATAACATTGATTTTTTGAATGTTGAACATTTAGTGATGTTTGATTTGCTAATGATTTCAGGACGAAGATGCCTTCTTTGCTGATTACGCTGAGGCTCACCAAAAGCTTTCCGAGCTTGGGTAAGTATTGATATTTCATACATTTTAATTTATAACTATGATTTTATGAAGCTTTTCTCTTAGTTTTACTTGACACGTTTTAC
Coding sequences of Glyma.U021900
>Glyma.U021900.1 sequence-type=CDS polypeptide=Glyma.U021900.1.p locus=Glyma.U021900 ID=Glyma.U021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAAGTCTTACCCAACTGTGAGTGCTGATTACCAGAAGGCCGTTGAGAAGGCGAAGAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGATGCGCTCCTCTAATGCTCCGTTTGGCATGGCACTCTGCTGGAACCTTTGACAAGGGCACGAAGACCGGTGGACCCTTCGGAACCATCAAGCACCCTGCCGAACTGGCTCACAGCGCTAACAACGGTCTTGACATCGCTGTTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCAGTTGGCTGGCGTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCCGATGCCACTAAGGGTTCTGACCATTTGAGAGATGTGTTTGGCAAAGCTATGGGGCTTACTGACCAAGATATCGTTGCTCTATCTGGGGGTCACACTATTGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGTCCCTGGACCTCTAATCCTCTTATTTTCGACAACTCATACTTCACGGAGTTGTTGAGTGGTGAGAAGGAAGGTCTCCTTCAGCTACCTTCTGACAAGGCTCTTTTGTCTGACCCTGTATTCCGCCCTCTCGTTGATAAATATGCAGCGGACGAAGATGCCTTCTTTGCTGATTACGCTGAGGCTCACCAAAAGCTTTCCGAGCTTGGGTTTGCTGATGCCTAA

>Glyma.U021900.2 sequence-type=CDS polypeptide=Glyma.U021900.2.p locus=Glyma.U021900 ID=Glyma.U021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAAGTCTTACCCAACTGTGAGTGCTGATTACCAGAAGGCCGTTGAGAAGGCGAAGAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGATGCGCTCCTCTAATGCTCCGTTTGGCATGGCACTCTGCTGGAACCTTTGACAAGGGCACGAAGACCGGTGGACCCTTCGGAACCATCAAGCACCCTGCCGAACTGGCTCACAGCGCTAACAACGGTCTTGACATCGCTGTTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCAGTTGGCTGGCGTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCCGATGCCACTAAGGGTTCTGACCATTTGAGAGATGTGTTTGGCAAAGCTATGGGGCTTACTGACCAAGATATCGTTGCTCTATCTGGGGGTCACACTATTGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGTCCCTGGACCTCTAATCCTCTTATTTTCGACAACTCATACTTCACGTGGGTATTTTCACGTATCCAGCACGGCCTTTTGAACACTCTTCTTCTTCTTTACTATTTGAAATTTCCGTTCTAA

>Glyma.U021900.3 sequence-type=CDS polypeptide=Glyma.U021900.3.p locus=Glyma.U021900 ID=Glyma.U021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAAGTCTTACCCAACTGTGAGTGCTGATTACCAGAAGGCCGTTGAGAAGGCGAAGAAGAAGCTCAGAGGCTTCATCGCTGAGAAGAGATGCGCTCCTCTAATGCTCCGTTTGGCATGGCACTCTGCTGGAACCTTTGACAAGGGCACGAAGACCGGTGGACCCTTCGGAACCATCAAGCACCCTGCCGAACTGGCTCACAGCGCTAACAACGGTCTTGACATCGCTGTTAGGCTTTTGGAGCCACTCAAGGCGGAGTTCCCTATTTTGAGCTACGCCGATTTCTACCAGTTGGCTGGCGTTGTTGCCGTTGAGGTCACGGGTGGACCTGAAGTTCCATTCCACCCTGGAAGAGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCCGATGCCACTAAGGGTTCTGACCATTTGAGAGATGTGTTTGGCAAAGCTATGGGGCTTACTGACCAAGATATCGTTGCTCTATCTGGGGGTCACACTATTGTATGTTATGATTTTGAATTTGTTGTTTTAGCCACATTGCAAAATTATGCTGCTATTATATTGAGAAAAAATGTCACATCTAAACTTTTGTACCACTACTGGTGTAATTTTGCCAAATGTATTTTGTAG
Predicted protein sequences of Glyma.U021900
>Glyma.U021900.1.p sequence-type=predicted peptide transcript=Glyma.U021900.1 locus=Glyma.U021900 ID=Glyma.U021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFADA*

>Glyma.U021900.2.p sequence-type=predicted peptide transcript=Glyma.U021900.2 locus=Glyma.U021900 ID=Glyma.U021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTWVFSRIQHGLLNTLLLLYYLKFPF*

>Glyma.U021900.3.p sequence-type=predicted peptide transcript=Glyma.U021900.3 locus=Glyma.U021900 ID=Glyma.U021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIVCYDFEFVVLATLQNYAAIILRKNVTSKLLYHYWCNFAKCIL*






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