Glyma.20g248800

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Report for Sequence Feature Glyma.20g248800

Feature Type:	gene_model
Chromosome:	Gm20
Start:	47779299
stop:	47792275
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g248800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16970.1	AT	KU70 homolog	JGI	N/A	IEA
GO:0000723	GO-bp	telomere maintenance	EnsemblGenomes	N/A	IEA
GO:0006303	GO-bp	double-strand break repair via nonhomologous end joining	EnsemblGenomes	N/A	IEA
GO:0006303	GO-bp	double-strand break repair via nonhomologous end joining	JGI	N/A	IEA
GO:0032508	GO-bp	DNA duplex unwinding	EnsemblGenomes	N/A	IEA
GO:0000784	GO-cc	nuclear chromosome, telomeric region	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0043564	GO-cc	Ku70:Ku80 complex	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0003684	GO-mf	damaged DNA binding	EnsemblGenomes	N/A	IEA
GO:0004003	GO-mf	ATP-dependent DNA helicase activity	EnsemblGenomes	N/A	IEA
GO:0004003	GO-mf	ATP-dependent DNA helicase activity	JGI	N/A	IEA
GO:0042162	GO-mf	telomeric DNA binding	EnsemblGenomes	N/A	IEA
KOG2327	KOG	DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen)	JGI	N/A	IEA
PTHR12604	Panther	KU AUTOANTIGEN DNA HELICASE	JGI	N/A	IEA
PTHR12604:SF2	Panther	X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 6	JGI	N/A	IEA
PF02037	PFAM	SAP domain	JGI	N/A	IEA
PF02735	PFAM	Ku70/Ku80 beta-barrel domain	JGI	N/A	IEA
PF03730	PFAM	Ku70/Ku80 C-terminal arm	JGI	N/A	IEA
PF03731	PFAM	Ku70/Ku80 N-terminal alpha/beta domain	JGI	N/A	IEA

Expression Patterns of Glyma.20g248800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g248800 not represented in the dataset	Glyma.20g248800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g248800

Paralog	Evidence	Comments
Glyma.10g297800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g248800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g39280	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g248800

Limit To All Plant Sequences

>Glyma.20g248800.2 sequence-type=transcript locus=Glyma.20g248800 ID=Glyma.20g248800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTTCCCGTTGTTTGGTTTGGTAAAGGCAAAGGGCACTGCGTTGACGGTCGAAATTCTGGGCGCGCATTAGAGAGAAAAAAGGGTTTGTATTTGAGAACTGAGAAGTGGGGAAGATGGATTTGGACGGTGATGATAATGATAATGACATCTTCAGAGACGACGAAGATGATCCTCAAGCTCAACTCTCTCTCCTCGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCGGAAGAAGACGACCAAAATGGTGAAACTCACTTCCACATTGCCATCTCTTGTATCTCTCAAACTCTCGAGTCTCAGATCATTAACAGATCCTACGACCAAGTTGCCATATGCTTCTTCAACACTAGGGAGAAGAACAATTTACAAGACTTAAACAGTGTTTTTGTATTTAATGTTCCTGAAAGAGAGTTTCTGGACAGGCCAACAGCAAGGCTCATAAAAGAATTTTATCAGCTGGAGGAATCATTTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCTGATTTGATTGGGTTGGAAGGAGATGATCTTGTAGACTTTATGCCATCAGCAGGAAAGAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTACCAAGCGCATAGTCAAAAGACTTAAGTTCATGATAGTTAATGGGATATCAATAGAACTGAATTCTTATGCTTTAATTCGTCCCACCGTCCCAGGAGCTATCACATGGCTTGATTCTGTTACTAATCATCCTTTGAAGATTGAAAGAACTTTCATTTGTGTTGATACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAACCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCTAGTGACGAGGGTACAGACAGCAGCATGTGCATGTTCATTGCCCTTCATAGTTTTGCTGTTGCATTTAGTGGTAGTTCCTCTCGCCCTCAATTGGTTGCTCTTATTGCGCAGGAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGCGTTATTCAGATACAAGTGGGATGGTGAATATAGCAAGTGATGATCAAATAAAAAAGGCAGCCAATCTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATGCCAAATTTCCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTGGCACTGGAAGAGGATGATATTCCGGAAATGAAAGATGAATCATTACCTGACGAGGAAGGCTTAGCCAGACCAGGAGTGGTAAGAGCATTAGAAGAATTCAAAACCTCTGTATATGGGGATAATTATGATGAGGAAAATGAGCCTGGCACTGAGAAGCCTACTGAAGCCTCCAAGAAACGAAAAGCAAATGCTGAGTTTGCAACAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTCACATGGCAAAATGAGCAAGGGGCTGACGTTTTTGTTAATGATTTTGCAACCTCGATAACTAGAATGCAAGACTCCTCTTAGCCACCAGAGCTGCTAAATCGATGTTTGGTTTATTATTGTTGACCCGGTTTGGATAAAAGACTGATTTGTACTTGACTGATCAACATGGCAGTATAGTATGTAATAGCATATTTTACTGGTAGAAGATAATCCTTGTTAGACCTCCAACCACAAAGTAACACATCTTATTTTGCAAAATGTGAAGTTATTTATATCTTCCTTTTT

Coding sequences of Glyma.20g248800

Limit To All Plant Sequences

>Glyma.20g248800.1 sequence-type=CDS polypeptide=Glyma.20g248800.1.p locus=Glyma.20g248800 ID=Glyma.20g248800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGGACGGTGATGATAATGATAATGACATCTTCAGAGACGACGAAGATGATCCTCAAGCTCAACTCTCTCTCCTCGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCGGAAGAAGACGACCAAAATGGTGAAACTCACTTCCACATTGCCATCTCTTGTATCTCTCAAACTCTCGAGTCTCAGATCATTAACAGATCCTACGACCAAGTTGCCATATGCTTCTTCAACACTAGGGAGAAGAACAATTTACAAGACTTAAACAGTGTTTTTGTATTTAATGTTCCTGAAAGAGAGTTTCTGGACAGGCCAACAGCAAGGCTCATAAAAGAATTTTATCAGCTGGAGGAATCATTTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCTGATTTGATTGGGTTGGAAGGAGATGATCTTGTAGACTTTATGCCATCAGCAGGAAAGAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTACCAAGCGCATAGTCAAAAGACTTAAGTTCATGATAGTTAATGGGATATCAATAGAACTGAATTCTTATGCTTTAATTCGTCCCACCGTCCCAGGAGCTATCACATGGCTTGATTCTGTTACTAATCATCCTTTGAAGATTGAAAGAACTTTCATTTGTGTTGATACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAACCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCTAGTGACGAGGGTACAGACAGCAGCATGTGCATGTTCATTGCCCTTCATAGGTCCATGATACAGCTCAATCGTTTTGCTGTTGCATTTAGTGGTAGTTCCTCTCGCCCTCAATTGGTTGCTCTTATTGCGCAGGAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGCGTTATTCAGATACAAGTGGGATGGTGAATATAGCAAGTGATGATCAAATAAAAAAGGCAGCCAATCTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATGCCAAATTTCCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTGGCACTGGAAGAGGATGATATTCCGGAAATGAAAGATGAATCATTACCTGACGAGGAAGGCTTAGCCAGACCAGGAGTGGTAAGAGCATTAGAAGAATTCAAAACCTCTGTATATGGGGATAATTATGATGAGGAAAATGAGCCTGGCACTGAGAAGCCTACTGAAGCCTCCAAGAAACGAAAAGCAAATGCTGAGTTTGCAACAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTCACATGGCAAAATGA

>Glyma.20g248800.2 sequence-type=CDS polypeptide=Glyma.20g248800.2.p locus=Glyma.20g248800 ID=Glyma.20g248800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGGACGGTGATGATAATGATAATGACATCTTCAGAGACGACGAAGATGATCCTCAAGCTCAACTCTCTCTCCTCGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCGGAAGAAGACGACCAAAATGGTGAAACTCACTTCCACATTGCCATCTCTTGTATCTCTCAAACTCTCGAGTCTCAGATCATTAACAGATCCTACGACCAAGTTGCCATATGCTTCTTCAACACTAGGGAGAAGAACAATTTACAAGACTTAAACAGTGTTTTTGTATTTAATGTTCCTGAAAGAGAGTTTCTGGACAGGCCAACAGCAAGGCTCATAAAAGAATTTTATCAGCTGGAGGAATCATTTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGATCCTTTTGGGAGTATCAAAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCTGATTTGATTGGGTTGGAAGGAGATGATCTTGTAGACTTTATGCCATCAGCAGGAAAGAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTACCAAGCGCATAGTCAAAAGACTTAAGTTCATGATAGTTAATGGGATATCAATAGAACTGAATTCTTATGCTTTAATTCGTCCCACCGTCCCAGGAGCTATCACATGGCTTGATTCTGTTACTAATCATCCTTTGAAGATTGAAAGAACTTTCATTTGTGTTGATACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAACCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCTAGTGACGAGGGTACAGACAGCAGCATGTGCATGTTCATTGCCCTTCATAGTTTTGCTGTTGCATTTAGTGGTAGTTCCTCTCGCCCTCAATTGGTTGCTCTTATTGCGCAGGAAGAAGTTATCCAATCAGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGATTTGTTGAAGAGCGTTATTCAGATACAAGTGGGATGGTGAATATAGCAAGTGATGATCAAATAAAAAAGGCAGCCAATCTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATGCCAAATTTCCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTGGCACTGGAAGAGGATGATATTCCGGAAATGAAAGATGAATCATTACCTGACGAGGAAGGCTTAGCCAGACCAGGAGTGGTAAGAGCATTAGAAGAATTCAAAACCTCTGTATATGGGGATAATTATGATGAGGAAAATGAGCCTGGCACTGAGAAGCCTACTGAAGCCTCCAAGAAACGAAAAGCAAATGCTGAGTTTGCAACAAAAGAGTGTGAAAACTATGACTGGGGTGATCTTGCTGATACTGGGAAGTTAAAGGACTTGACTGTGGTGGAGTTAAAATATTATCTTACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCCATAATTAGCCGAATATTAACTCACATGGCAAAATGA

Predicted protein sequences of Glyma.20g248800

Limit To All Plant Sequences

>Glyma.20g248800.1.p sequence-type=predicted peptide transcript=Glyma.20g248800.1 locus=Glyma.20g248800 ID=Glyma.20g248800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLDGDDNDNDIFRDDEDDPQAQLSLLENESSKEYVVYLVDASPKMFSTTCPAEEDDQNGETHFHIAISCISQTLESQIINRSYDQVAICFFNTREKNNLQDLNSVFVFNVPEREFLDRPTARLIKEFYQLEESFSKIIGSQHGIVSGTRENSLYNAIWAAQALLRKGSAKTVDKRILLFTNDDDPFGSIKGAVKSDMTRMTLQRAKDAQDLGISIELLPLSHPDEVFNVSQFYADLIGLEGDDLVDFMPSAGKKLEDMKDQLRKRMFTKRIVKRLKFMIVNGISIELNSYALIRPTVPGAITWLDSVTNHPLKIERTFICVDTGALVEEPTKRFLPYKNQNIIFSMKQLSEIKRVSTGHLHLLGFKPLSCLRDYYNLKPSTFLYPSDEGTDSSMCMFIALHRSMIQLNRFAVAFSGSSSRPQLVALIAQEEVIQSGGQIEPPGMHMIYLPYSDDIRFVEERYSDTSGMVNIASDDQIKKAANLIKRIDLKDFSVCQISNPALQRHYAVLQALALEEDDIPEMKDESLPDEEGLARPGVVRALEEFKTSVYGDNYDEENEPGTEKPTEASKKRKANAEFATKECENYDWGDLADTGKLKDLTVVELKYYLTAHNLPVSGKKEAIISRILTHMAK*

>Glyma.20g248800.2.p sequence-type=predicted peptide transcript=Glyma.20g248800.2 locus=Glyma.20g248800 ID=Glyma.20g248800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLDGDDNDNDIFRDDEDDPQAQLSLLENESSKEYVVYLVDASPKMFSTTCPAEEDDQNGETHFHIAISCISQTLESQIINRSYDQVAICFFNTREKNNLQDLNSVFVFNVPEREFLDRPTARLIKEFYQLEESFSKIIGSQHGIVSGTRENSLYNAIWAAQALLRKGSAKTVDKRILLFTNDDDPFGSIKGAVKSDMTRMTLQRAKDAQDLGISIELLPLSHPDEVFNVSQFYADLIGLEGDDLVDFMPSAGKKLEDMKDQLRKRMFTKRIVKRLKFMIVNGISIELNSYALIRPTVPGAITWLDSVTNHPLKIERTFICVDTGALVEEPTKRFLPYKNQNIIFSMKQLSEIKRVSTGHLHLLGFKPLSCLRDYYNLKPSTFLYPSDEGTDSSMCMFIALHSFAVAFSGSSSRPQLVALIAQEEVIQSGGQIEPPGMHMIYLPYSDDIRFVEERYSDTSGMVNIASDDQIKKAANLIKRIDLKDFSVCQISNPALQRHYAVLQALALEEDDIPEMKDESLPDEEGLARPGVVRALEEFKTSVYGDNYDEENEPGTEKPTEASKKRKANAEFATKECENYDWGDLADTGKLKDLTVVELKYYLTAHNLPVSGKKEAIISRILTHMAK*

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