Glyma.20g242900

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Report for Sequence Feature Glyma.20g242900

Feature Type:	gene_model
Chromosome:	Gm20
Start:	47343509
stop:	47347590
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g242900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04680.1	AT	CLP-similar protein 3	JGI	N/A	IEA
GO:0006378	GO-bp	mRNA polyadenylation	EnsemblGenomes	N/A	IEA
GO:0006379	GO-bp	mRNA cleavage	EnsemblGenomes	N/A	IEA
GO:0006388	GO-bp	tRNA splicing, via endonucleolytic cleavage and ligation	EnsemblGenomes	N/A	IEA
GO:0006397	GO-bp	mRNA processing	EnsemblGenomes	N/A	IEA
GO:0016310	GO-bp	phosphorylation	EnsemblGenomes	N/A	IEA
GO:0031124	GO-bp	mRNA 3'-end processing	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005849	GO-cc	mRNA cleavage factor complex	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0051731	GO-mf	polynucleotide 5'-hydroxyl-kinase activity	EnsemblGenomes	N/A	IEA
KOG2749	KOG	mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1	JGI	N/A	IEA
PTHR12755	Panther	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	JGI	N/A	IEA
PF03205	PFAM	Molybdopterin guanine dinucleotide synthesis protein B	JGI	N/A	IEA
PF06807	PFAM	Pre-mRNA cleavage complex II protein Clp1	JGI	N/A	IEA

Expression Patterns of Glyma.20g242900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g242900 not represented in the dataset	Glyma.20g242900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g242900

Paralog	Evidence	Comments
Glyma.10g292700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g242900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g38670	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g242900

Limit To All Plant Sequences

>Glyma.20g242900.2 sequence-type=transcript locus=Glyma.20g242900 ID=Glyma.20g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aaagaaaaaacgaaaaaCCCTTTCGTTTCGTCTTCTCCAAATCCGGTTGAATATTCAATTCATACTCTGCTTCTCAACTTTCTTCCCCTTTCCTTCACTTGCTTACTCCCATTCGCAAACCCTAACGGCCAACGCAGCAAGTTGAATTTTCAGAATCGATTCGTCCAAGTTTGATTCGAAGCAAAAAGAAGCGAAATTGGAGTTTTAGGGAAAGAAGAAGGGAAAAAAAAATGGCGTACGGTGGTGCAGGTCCCGTAGGTGGTTCGGGTTCGGCATCGACAATAAAGCAAGTCAAATTGGAGAGAGAAAGCGAACTGAGAATAGAAGTTGGTAACGACGCACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTTGGCACCGAGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGACTCCAATGGTTAGTTATGTAAATGTCCATGCTGTGCTAGATGGAAGAAGAAGTCGTGCTAAAGCCTCATCACCAGATGATTCTGGTTCTTCTCAGGGCCCTAGGGTCATTGTTGTAGGACCTACTGATTCTGGAAAGAGTACCTTGTCGAGGATGCTTCTTAGTTGGGCAGCTAAACAAGGTTGGAAGCCTACCTTTGTTGATCTGGATATTGGCCAAGGGTCTATAACAATTCCTGGATGCATTGCTGCCACTCCAATTGAAATGCCCATTGATCCTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGTAACAATGTAGAATTGTATAAAGTGCTTGTTAAGGAGCTTGCAGGGATGATTGAGAGGCAATTTACTGGAAATGCTGAATCTAGAGCTTCAGGCATGGTGATAAATACTATGGGATGGATAGAGGGTGTAGGCTATGATTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAACTGTGCAGCATGCTCAAAGATGTGCTCAAGAGTGAGCCCAAAGTAGACGTAGTTAAACTTCAGAGGTCAGGTGGAGTTGTATCTAGGAATGCAAAAGTCCGTCAGAAGGCCAGAAGTTATAGGATAAGGGCCCCACGCTCAGCCTTGCCCATTGGAGCAGAACCTGCTGCAGATCCAACAAGAGTTGTACCTGTAAATATAAATCGTGATTTGCTCCATTTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAGAAAGAAGATAACATATCTTGCTCCATCTGCTGGAGAACTTCCAAGCAAGTATTTGATAATGGGATCCTTGACATGGCTTGAAACATGAGCTAATGAACAGTTTTGTACTGGAAAATCTCGCTAAATTCGTTGCTCTGGTTTGTGTCGTGATCAAATGTAAATACTAAATGTAGTTTACAACACTGTTGTGATGGGGATTGTTTGTCGTAGTGAGAGAGGCTGACCTTTGTAACGGAATATCTAATATTCTGATTTAAAATCTTATTATACTCGTTGAGTAGCAAGTTACTTATGATTCTTGAAGTTGAACTACAATTGTATGACGTACTATATCTTAACAGCAGAACTGGGCAACACATGCTGCATAAAACTGTAACTCAGGGAATGACCATTTGTTTACGTTGGGAGTGGATTATCTCACAAATATGACTAGTCCAACTTTAAATCCTGTGTCCGTGT

Coding sequences of Glyma.20g242900

Limit To All Plant Sequences

>Glyma.20g242900.1 sequence-type=CDS polypeptide=Glyma.20g242900.1.p locus=Glyma.20g242900 ID=Glyma.20g242900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTACGGTGGTGCAGGTCCCGTAGGTGGTTCGGGTTCGGCATCGACAATAAAGCAAGTCAAATTGGAGAGAGAAAGCGAACTGAGAATAGAAGTTGGTAACGACGCACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTTGGCACCGAGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGACTCCAATGGTTAGTTATGTAAATGTCCATGCTGTGCTAGATGGAAGAAGAAGTCGTGCTAAAGCCTCATCACCAGATGATTCTGGTTCTTCTCAGGGCCCTAGGGTCATTGTTGTAGGACCTACTGATTCTGGAAAGAGTACCTTGTCGAGGATGCTTCTTAGTTGGGCAGCTAAACAAGGTTGGAAGCCTACCTTTGTTGATCTGGATATTGGCCAAGGGTCTATAACAATTCCTGGATGCATTGCTGCCACTCCAATTGAAATGCCCATTGATCCTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGTAACAATGTAGAATTGTATAAAGTGCTTGTTAAGGAGCTTGCAGGGATGATTGAGAGGCAATTTACTGGAAATGCTGAATCTAGAGCTTCAGGCATGGTGATAAATACTATGGGATGGATAGAGGGTGTAGGCTATGATTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAACTGTGCAGCATGCTCAAAGATGTGCTCAAGAGTGAGCCCAAAGTAGACGTAGTTAAACTTCAGAGGTCAGGTGGAGTTGTATCTAGGAATGCAAAAGTCCGTCAGAAGGCCAGAAGTTATAGGATAAGGGAATACTTCTATGGCCTTTCAAATGATCTTTCTCCACATTCTAATATTGCAAATTTTAGTGATTTGTTTGTTTATCGAGTTGGTGGTGGGCCACAGGCCCCACGCTCAGCCTTGCCCATTGGAGCAGAACCTGCTGCAGATCCAACAAGAGTTGTACCTGTAAATATAAATCGTGATTTGCTCCATTTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAGAAAGAAGATAACATATCTTGCTCCATCTGCTGGAGAACTTCCAAGCAAGTATTTGATAATGGGATCCTTGACATGGCTTGAAACATGA

>Glyma.20g242900.2 sequence-type=CDS polypeptide=Glyma.20g242900.2.p locus=Glyma.20g242900 ID=Glyma.20g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTACGGTGGTGCAGGTCCCGTAGGTGGTTCGGGTTCGGCATCGACAATAAAGCAAGTCAAATTGGAGAGAGAAAGCGAACTGAGAATAGAAGTTGGTAACGACGCACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTTGGCACCGAGCTTCCACCCGAAATCTGGCTCAATTTTCCTCCCAGGCTCAAGTTTGCTGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGTGCTACTGAAACTGATTATACTGCAGATGAGACTCCAATGGTTAGTTATGTAAATGTCCATGCTGTGCTAGATGGAAGAAGAAGTCGTGCTAAAGCCTCATCACCAGATGATTCTGGTTCTTCTCAGGGCCCTAGGGTCATTGTTGTAGGACCTACTGATTCTGGAAAGAGTACCTTGTCGAGGATGCTTCTTAGTTGGGCAGCTAAACAAGGTTGGAAGCCTACCTTTGTTGATCTGGATATTGGCCAAGGGTCTATAACAATTCCTGGATGCATTGCTGCCACTCCAATTGAAATGCCCATTGATCCTGTGGAAGGCATTCCACTTGAAATGCCTCTTGTTTACTATTATGGGCACGCGACTCCTAGTAACAATGTAGAATTGTATAAAGTGCTTGTTAAGGAGCTTGCAGGGATGATTGAGAGGCAATTTACTGGAAATGCTGAATCTAGAGCTTCAGGCATGGTGATAAATACTATGGGATGGATAGAGGGTGTAGGCTATGATTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAACTGTGCAGCATGCTCAAAGATGTGCTCAAGAGTGAGCCCAAAGTAGACGTAGTTAAACTTCAGAGGTCAGGTGGAGTTGTATCTAGGAATGCAAAAGTCCGTCAGAAGGCCAGAAGTTATAGGATAAGGGCCCCACGCTCAGCCTTGCCCATTGGAGCAGAACCTGCTGCAGATCCAACAAGAGTTGTACCTGTAAATATAAATCGTGATTTGCTCCATTTAGTCCTTGCTGTTTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGCAATGTTGCTGGGTTTATTTATGTAACAGACGTTGACATTCAGAGAAAGAAGATAACATATCTTGCTCCATCTGCTGGAGAACTTCCAAGCAAGTATTTGATAATGGGATCCTTGACATGGCTTGAAACATGA

Predicted protein sequences of Glyma.20g242900

Limit To All Plant Sequences

>Glyma.20g242900.1.p sequence-type=predicted peptide transcript=Glyma.20g242900.1 locus=Glyma.20g242900 ID=Glyma.20g242900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYGGAGPVGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYGATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSGSSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEMPLVYYYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKVRQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEPAADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDVDIQRKKITYLAPSAGELPSKYLIMGSLTWLET*

>Glyma.20g242900.2.p sequence-type=predicted peptide transcript=Glyma.20g242900.2 locus=Glyma.20g242900 ID=Glyma.20g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYGGAGPVGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYGATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSGSSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEMPLVYYYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKVRQKARSYRIRAPRSALPIGAEPAADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDVDIQRKKITYLAPSAGELPSKYLIMGSLTWLET*

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