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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54870.1 | AT | NAD(P)-binding Rossmann-fold superfamily protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| KOG0725 | KOG | Reductases with broad range of substrate specificities | JGI | N/A | IEA |
| PTHR24315 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24315:SF77 | Panther | JGI | N/A | IEA | |
| PF00106 | PFAM | short chain dehydrogenase | JGI | N/A | IEA |
| PWY-5410 | SoyCyc9 | traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5453 | SoyCyc9 | methylglyoxal degradation III | Plant Metabolic Network | ISS | |
| PWY-6786 | SoyCyc9 | detoxification of reactive carbonyls in chloroplasts | Plant Metabolic Network | ISS | |
| GN7V-60849 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PM34 | seed maturation protein PM34 |
|
Glyma.20g233000 not represented in the dataset |
Glyma.20g233000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g155300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g37670 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g233000.1 sequence-type=CDS polypeptide=Glyma.20g233000.1.p locus=Glyma.20g233000 ID=Glyma.20g233000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCCGGTGAACAGAAATTCCCTCCTCAACAACAACAAACACAGCCTGGGAAGGAGCATGCTATGACTCCAGTACCCCAATTCACTAGCCCTGACTACAAGCCTTCAAATAAACTTCAAGGGAAGATTGCATTAGTCACTGGGGGTGATTCTGGGATTGGACGAGCGGTGTGTAACTTGTTTGCCTTAGAAGGTGCTACCGTGGCCTTCACGTATGTGAAGGGGCATGAGGACAAGGACGCGAGGGACACATTGGAAATGATCAAGAGAGCAAAGACTTCGGATGCCAAGGATCCAATGGCAATACCATCTGATTTGGGTTACGATGAGAACTGCAAGAGGGTGGTTGATGAGGTCGTGAGTGCTTATGGTCGTATTGACATTCTGGTCAACAATGCAGCTGAGCAGTACGAGTGTGGAACCGTGGAGGACATAGACGAGCCTAGGCTTGAGAGGGTCTTTCGTACAAATATCTTCTCCTATTTCTTCATGGCGAGGCATGCCTTGAAGCACATGAAGGAAGGAAGCAGCATTATCAACACGACATCAGTGAATGCATACAAGGGACATGCGAAACTATTGGACTACACGTCCACCAAGGGGGCAATTGTGGCCTATACAAGGGGTCTTGCCCTTCAGCTGGTGAGTAAGGGAATTCGGGTTAATGGGGTGGCTCCAGGGCCCATTTGGACCCCTTTGATACCAGCCTCTTTCAAGGAGGAAGAAACGGCCCAATTTGGAGCGCAGGTCCCAATGAAGAGAGCTGGTCAACCTATTGAGGTTGCTCCTTCCTATGTTTTTCTTGCTTCCAACCAATGCTCCTCTTACATAACTGGACAAGTCCTTCACCCCAATGGTGGAACCGTTGTGAATGGTTAA
>Glyma.20g233000.1.p sequence-type=predicted peptide transcript=Glyma.20g233000.1 locus=Glyma.20g233000 ID=Glyma.20g233000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASGEQKFPPQQQQTQPGKEHAMTPVPQFTSPDYKPSNKLQGKIALVTGGDSGIGRAVCNLFALEGATVAFTYVKGHEDKDARDTLEMIKRAKTSDAKDPMAIPSDLGYDENCKRVVDEVVSAYGRIDILVNNAAEQYECGTVEDIDEPRLERVFRTNIFSYFFMARHALKHMKEGSSIINTTSVNAYKGHAKLLDYTSTKGAIVAYTRGLALQLVSKGIRVNGVAPGPIWTPLIPASFKEEETAQFGAQVPMKRAGQPIEVAPSYVFLASNQCSSYITGQVLHPNGGTVVNG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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