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Report for Sequence Feature Glyma.20g230600

Feature Type:gene_model
Chromosome:Gm20
Start:46455404
stop:46458009
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g230600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27320.1AT alpha/beta-Hydrolases superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009056GO-bp catabolic process EnsemblGenomesN/AIEA
GO:0009939GO-bp positive regulation of gibberellic acid mediated signaling pathway EnsemblGenomesN/AIEA
GO:0010325GO-bp raffinose family oligosaccharide biosynthetic process EnsemblGenomesN/AIEA
GO:0048444GO-bp floral organ morphogenesis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0010331GO-mf gibberellin binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG1515 KOG Arylacetamide deacetylase JGI N/AIEA
PTHR23024Panther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES JGI N/AIEA
PTHR23024:SF10Panther JGI N/AIEA
PF07859PFAM alpha/beta hydrolase fold JGI N/AIEA
GN7V-42192SoyCyc9-rxn carboxylesterase Plant Metabolic Network ISS

Proteins Associated with Glyma.20g230600
LocusGene SymbolProtein Name
GR2 giberellic acid responsive gene 2
GID1C GID Complex Subunit

Expression Patterns of Glyma.20g230600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g230600
ParalogEvidenceComments
Glyma.10g158000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g230600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g37430 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g230600
>Glyma.20g230600.2 sequence-type=transcript locus=Glyma.20g230600 ID=Glyma.20g230600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAACTCTCGTTTCACGAGAATTAGGAAGTTATTTCCAGAGTTTGATGTTGGTGAGTTCCTGTATCCCTGTGCCACTTTTTAGCATTTTCTACAGTGCGCACGGCTTCTTATCCTTCACCATCCCATTCCTCTTCTCTTTCCCTGCCACTGAACCCAAACAAACCAGCGCTGTCGTTGGATCTCACACAACCCGATTCTCGTGCTTTTATGGATTTGCGTCGCCAAGAGAGTTTGTGATTTTCAGCTTGCGAAGCGCCTTGCGGATCTGTGATCGGAATACAGGATCGTTTCAATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGATAGGCTTAACTTTTGCTATAATACACGACAAGTGGGCGTTAGAAGATTGTGTAGGAAATAGGTACTTACATGCTACTAAATGTGTCGTGAGATTTGGTGTAATCAGCATATAGCTGTGTGATGTTTTTCCTGAGCACATAATGAGGAAATTGGGTGCTGCGGATAGGTGAAAGCTTTTTAGGACAAAGGGAGCTCAGGTCATGTTTATGGGAACCACCAAAGTTGTGATTACCCACTCTGACTTCTAGCCAAAAAGGAGAGGAAGGCCTTATTCTATTTCTGGGCGTGACCTTGATGCCAATCAGGTGGGGCTTGTCGTTGTCTGGCTAGTGTtatatatatatatatatatataACTAATTTTGGAACTAGGATAGGAAAATATCAATGATATGTTGGTGCTGTTAGGTTATATACGTCTGTGCTATCTTCATATGAGTGTTTTAAGACTGTTCACTCTTTCTCTATATAGCTAATTTTACATTCCCATGTCTTGGGTTGGGTTTGTCCTTGTTTGACGATGGAGACTCCTTGCAAATGTAAATGGATGTCTTTTCCGCAGCAATGCTTAGGGTTTGTATTATGTTTGCTTCTGTATATATAGATATTTTGCAGCTTTTTCTTATGCATTA

>Glyma.20g230600.3 sequence-type=transcript locus=Glyma.20g230600 ID=Glyma.20g230600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCGTTTCACGAGAATTAGGAAGTTATTTCCAGAGTTTGATGTTGGTGAGTTCCTGTATCCCTGTGCCACTTTTTAGCATTTTCTACAGTGCGCACGGCTTCTTATCCTTCACCATCCCATTCCTCTTCTCTTTCCCTGCCACTGAACCCAAACAAACCAGCGCTGTCGTTGGATCTCACACAACCCGATTCTCGTGCTTTTATGGATTTGCGTCGCCAAGAGAGTTTGTGATTTTCAGCTTGCGAAGCGCCTTGCGGATCTGTGATCGGAATACAGGATCGTTTCAATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGATAGGCTTAACTTTTGCTATAATACACGACAAGTGGGCGTTAGAAGATTGTGTAGGAAATAGCATATAGCTGTGTGATGTTTTTCCTGAGCACATAATGAGGAAATTGGGTGCTGCGGATAGGTGAAAGCTTTTTAGGACAAAGGGAGCTCAGGTCATGTTTATGGGAACCACCAAAGTTGTGATTACCCACTCTGACTTCTAGCCAAAAAGGAGAGGAAGGCCTTATTCTATTTCTGGGCGTGACCTTGATGCCAATCAGGTGGGGCTTGTCGTTGTCTGGCTAGTGTtatatatatatatatatatataACTAATTTTGGAACTAGGATAGGAAAATATCAATGATATGTTGGTGCTGTTAGGTTATATACGTCTGTGCTATCTTCATATGAGTGTTTTAAGACTGTTCACTCTTTCTCTATATAGCTAATTTTACATTCCCATGTCTTGGGTTGGGTTTGTCCTTGTTTGACGATGGAGACTCCTTGCAAATGTAAATGGATGTCTTTTCCGCAGCAATGCTTAGGGTTTGTATTATGTTTGCTTCTGTATATATAGATATTTTGCAGCTTTTTCTTATGCATTA
Coding sequences of Glyma.20g230600
>Glyma.20g230600.1 sequence-type=CDS polypeptide=Glyma.20g230600.1.p locus=Glyma.20g230600 ID=Glyma.20g230600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGA

>Glyma.20g230600.2 sequence-type=CDS polypeptide=Glyma.20g230600.2.p locus=Glyma.20g230600 ID=Glyma.20g230600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGA

>Glyma.20g230600.3 sequence-type=CDS polypeptide=Glyma.20g230600.3.p locus=Glyma.20g230600 ID=Glyma.20g230600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTCCGTCGCCCTGATGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAAGTTCCAGCCAATGCGAACCCTGTGGACGGAGTGTTCTCATTTGATGTCATTGTTGACCGTGAAACCAATCTTCTGACTCGAATCTATCGTCTTGCTGAGGGAGAAGAACGTTCCGTGAACATTCTTGACCTTGAGAAGCCCGTGAACTCTGAGGTTGTTCCTGTCATCATATTCTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACACTGTGTCGTCGCCTGGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTGCATCTTGGCTTCAGAGTAGGAAGGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCCCTCAAAGCCATGGAGTCGGGAATTGAAGTGTTTGGGAATATACTGCTCAACCCATTGTTTGGCGGGCAAGAAAGAACAGAGTCCGAGAAGCGTTTAGATGGGAGGTATTTTGTTGGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGCAAAAGCCTTGAAGGGATAACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAGTTGGGTTATGCAAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCGTTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCGGCTCTGACTGTTGA
Predicted protein sequences of Glyma.20g230600
>Glyma.20g230600.1.p sequence-type=predicted peptide transcript=Glyma.20g230600.1 locus=Glyma.20g230600 ID=Glyma.20g230600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGSNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRLAEGEERSVNILDLEKPVNSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSASWLQSRKDKKVHIYMAGDSSGGNIVHHVALKAMESGIEVFGNILLNPLFGGQERTESEKRLDGRYFVGVKDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLEGITFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLLFLEQATVGFYLLPNNEHFSPVMDEIKYFVGSDC*

>Glyma.20g230600.2.p sequence-type=predicted peptide transcript=Glyma.20g230600.2 locus=Glyma.20g230600 ID=Glyma.20g230600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGSNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRLAEGEERSVNILDLEKPVNSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSASWLQSRKDKKVHIYMAGDSSGGNIVHHVALKAMESGIEVFGNILLNPLFGGQERTESEKRLDGRYFVGVKDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLEGITFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLLFLEQATVGFYLLPNNEHFSPVMDEIKYFVGSDC*

>Glyma.20g230600.3.p sequence-type=predicted peptide transcript=Glyma.20g230600.3 locus=Glyma.20g230600 ID=Glyma.20g230600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGSNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRLAEGEERSVNILDLEKPVNSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSASWLQSRKDKKVHIYMAGDSSGGNIVHHVALKAMESGIEVFGNILLNPLFGGQERTESEKRLDGRYFVGVKDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLEGITFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLLFLEQATVGFYLLPNNEHFSPVMDEIKYFVGSDC*






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