Glyma.20g224000

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Report for Sequence Feature Glyma.20g224000

Feature Type:	gene_model
Chromosome:	Gm20
Start:	45852088
stop:	45858793
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g224000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28300.1	AT	Duplicated homeodomain-like superfamily protein	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI	N/A	IEA
PTHR19876	Panther	COATOMER	JGI	N/A	IEA
PTHR19876:SF2	Panther	COATOMER SUBUNIT BETA'	JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Expression Patterns of Glyma.20g224000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g224000 not represented in the dataset	Glyma.20g224000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g224000

Paralog	Evidence	Comments
Glyma.10g161200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g224000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g36680	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g224000

Limit To All Plant Sequences

>Glyma.20g224000.2 sequence-type=transcript locus=Glyma.20g224000 ID=Glyma.20g224000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATCTTTTCCCTTCCATGCAAGGACAAATTCTTTGATAAATGTGTgagagagaaagacagaaatcagagagagagagGGGTTGGTGCGTAGTTTGTAAGTTGCTTGCTTGTAGCATTTTGCTGATTTTAATTTACAGTGAGCACAGGAAAGAAGAGGTAAAGAAGAGAGAAGTGGTAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCTCTACCTCTTCACTTACCTTTCCCTCTCCATACTTCAGGAGGAACCCCCAATACGACCACCTTCCCCTCCAATTTTGATCCCTATAACCATCCCCATCAATTGCCACTCCAACCCAACAATCTCTTGCACCCATTACACCACAAAGATGAAGACAAGGAAGAAAACACCACCGTCCCGATGAACTTGGAAATCCAAAGGGATCAAAGGCAACAACTTCCCGAGCTGATTGATCCCTGGAATAACGATGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTACGGCaagaataataataataataataatagtagcaattatCGGTTTCTTAGTGAGCTTGAACAGCTTTATCACCAAGGGGGTAGTGGTGATCATCATCTTGAAAATACGACTCAGCCACCACTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAGTTGGAAGTAGAAGGGGATTCTAGAAACGTTGTTGACGCATTGGTGACAAAACAAAACGAGCAAAGCGACGAGGCACTAGCAGTGGAAAAGATCACAAAGGACCGCAAGAGGAAGAGGCCTGATAGGTTTGAGATGTTCAAGTGTTTTTGTGAGAGCATTGTGCACAAGATAATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTTGAGGACATGATGAAGAGAGATGACGAGAAGTTCACTAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCCTTAACAAATTCTCAGCCACTTCGTCCCCTGCAAGCCACACCCTCAAGAAGGTAAACAATGATTCAAACATAAACACACACATTACACAAAACCCTAATCCTTCACAAACAGAAAACCCTACCTTAAGTGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAACTCCAGCTCTTCCCCAGAACCCTAGTACTTATTCTCTAAATATCCAGAATAATAATAATAATATTCCAGTAGAGACAAATTCGGTTTTGAATAAAGGGAATGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGTGCACCAGTGTGAACAACAACAACAATGAGGAGAAGGAAGGGAACAACAAGGTCCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAACAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACCCGTTCTGCAATCTGAAAGCCACTTGAATAGTCCACCTAATCAGAATCCCGAGCAAGTGACACCAGATCAAACAACACAAGCTCACGAGTCTTCTTCTCAGGTGGGGTCTGGTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTCGATCAGTTTTAATTCATTGATTTGTCCATGTTCTGTCACATAATAAGAAGTGTAGCACTTTTTTTTTTAATTTTTGTTTTCTGGTTGATGCTGGCTTTCTTTAATATAGCATATAAATTGATTGTGTATATTTGAAAACTTAGAATTTGGCGAGCACCGACAGCTATAGCTAGTTTGAGGAATGAGAACCATTAATATTTCTATTCCGGTGTAAGTGTTATTTTCATATTCCGTTTGATTTTATTTTAGCGAGGGAAATTAATTGGTGTTTCATATTTGTTTTAATAGGGGAAGACATTTACCTGTGAAAAAAATAAAGGAA

Coding sequences of Glyma.20g224000

Limit To All Plant Sequences

>Glyma.20g224000.1 sequence-type=CDS polypeptide=Glyma.20g224000.1.p locus=Glyma.20g224000 ID=Glyma.20g224000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGACAGACCTTATTGGTTCTGATGATCTCACTGCCAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCATACTCTAGAAGGTCACGCGTACAATGCATCTGCTGTCTGCTTTCATCCTGAACTGCCTATAATCATTACTGGCCATAAGGATGGCACAGAGCGCATTTGGCATTCAACAACTTACGGGAAAGAAGAGGTAAAGAAGAGAGAAGTGGTAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCTCTACCTCTTCACTTACCTTTCCCTCTCCATACTTCAGGAGGAACCCCCAATACGACCACCTTCCCCTCCAATTTTGATCCCTATAACCATCCCCATCAATTGCCACTCCAACCCAACAATCTCTTGCACCCATTACACCACAAAGATGAAGACAAGGAAGAAAACACCACCGTCCCGATGAACTTGGAAATCCAAAGGGATCAAAGGCAACAACTTCCCGAGCTGATTGATCCCTGGAATAACGATGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTACGGCAAGAATAATAATAATAATAATAATAGTAGCAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCACCAAGGGGGTAGTGGTGATCATCATCTTGAAAATACGACTCAGCCACCACTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAGTTGGAAGTAGAAGGGGATTCTAGAAACGTTGTTGACGCATTGGTGACAAAACAAAACGAGCAAAGCGACGAGGCACTAGCAGTGGAAAAGATCACAAAGGACCGCAAGAGGAAGAGGCCTGATAGGTTTGAGATGTTCAAGTGTTTTTGTGAGAGCATTGTGCACAAGATAATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTTGAGGACATGATGAAGAGAGATGACGAGAAGTTCACTAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCCTTAACAAATTCTCAGCCACTTCGTCCCCTGCAAGCCACACCCTCAAGAAGGTAAACAATGATTCAAACATAAACACACACATTACACAAAACCCTAATCCTTCACAAACAGAAAACCCTACCTTAAGTGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAACTCCAGCTCTTCCCCAGAACCCTAGTACTTATTCTCTAAATATCCAGAATAATAATAATAATATTCCAGTAGAGACAAATTCGGTTTTGAATAAAGGGAATGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGTGCACCAGTGTGAACAACAACAACAATGAGGAGAAGGAAGGGAACAACAAGGTCCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAACAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACCCGTTCTGCAATCTGAAAGCCACTTGAATAGTCCACCTAATCAGAATCCCGAGCAAGTGACACCAGATCAAACAACACAAGCTCACGAGTCTTCTTCTCAGGTGGGGTCTGGTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTCGATCAGTTTTAA

>Glyma.20g224000.2 sequence-type=CDS polypeptide=Glyma.20g224000.2.p locus=Glyma.20g224000 ID=Glyma.20g224000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGTGAGAGAGAAAGACAGAAATCAGAGAGAGAGAGGGGTTGGTGCGTAGTTTGTAAGTTGCTTGCTTGTAGCATTTTGCTGATTTTAATTTACAGTGAGCACAGGAAAGAAGAGGTAAAGAAGAGAGAAGTGGTAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCTCTACCTCTTCACTTACCTTTCCCTCTCCATACTTCAGGAGGAACCCCCAATACGACCACCTTCCCCTCCAATTTTGATCCCTATAACCATCCCCATCAATTGCCACTCCAACCCAACAATCTCTTGCACCCATTACACCACAAAGATGAAGACAAGGAAGAAAACACCACCGTCCCGATGAACTTGGAAATCCAAAGGGATCAAAGGCAACAACTTCCCGAGCTGATTGATCCCTGGAATAACGATGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTACGGCAAGAATAATAATAATAATAATAATAGTAGCAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCACCAAGGGGGTAGTGGTGATCATCATCTTGAAAATACGACTCAGCCACCACTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAGTTGGAAGTAGAAGGGGATTCTAGAAACGTTGTTGACGCATTGGTGACAAAACAAAACGAGCAAAGCGACGAGGCACTAGCAGTGGAAAAGATCACAAAGGACCGCAAGAGGAAGAGGCCTGATAGGTTTGAGATGTTCAAGTGTTTTTGTGAGAGCATTGTGCACAAGATAATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTTGAGGACATGATGAAGAGAGATGACGAGAAGTTCACTAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCCTTAACAAATTCTCAGCCACTTCGTCCCCTGCAAGCCACACCCTCAAGAAGGTAAACAATGATTCAAACATAAACACACACATTACACAAAACCCTAATCCTTCACAAACAGAAAACCCTACCTTAAGTGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAACTCCAGCTCTTCCCCAGAACCCTAGTACTTATTCTCTAAATATCCAGAATAATAATAATAATATTCCAGTAGAGACAAATTCGGTTTTGAATAAAGGGAATGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGTGCACCAGTGTGAACAACAACAACAATGAGGAGAAGGAAGGGAACAACAAGGTCCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAACAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACCCGTTCTGCAATCTGAAAGCCACTTGAATAGTCCACCTAATCAGAATCCCGAGCAAGTGACACCAGATCAAACAACACAAGCTCACGAGTCTTCTTCTCAGGTGGGGTCTGGTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTCGATCAGTTTTAA

Predicted protein sequences of Glyma.20g224000

Limit To All Plant Sequences

>Glyma.20g224000.1.p sequence-type=predicted peptide transcript=Glyma.20g224000.1 locus=Glyma.20g224000 ID=Glyma.20g224000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVTDLIGSDDLTAKVWDYQTKSCVHTLEGHAYNASAVCFHPELPIIITGHKDGTERIWHSTTYGKEEVKKREVVTQNTNTNMFDGVPDQFHQFITPRTSLPLHLPFPLHTSGGTPNTTTFPSNFDPYNHPHQLPLQPNNLLHPLHHKDEDKEENTTVPMNLEIQRDQRQQLPELIDPWNNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELEQLYHQGGSGDHHLENTTQPPLQKQDKMGHHALELEVEGDSRNVVDALVTKQNEQSDEALAVEKITKDRKRKRPDRFEMFKCFCESIVHKIMAQQEEMHNKLLEDMMKRDDEKFTREEAWKKQEIEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPASHTLKKVNNDSNINTHITQNPNPSQTENPTLSVAQDTLQVIPSTSSTSTPALPQNPSTYSLNIQNNNNNIPVETNSVLNKGNEKDDVGRRWPKDEVLALINLRCTSVNNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKPVLQSESHLNSPPNQNPEQVTPDQTTQAHESSSQVGSGGGFSVQQQQVDHGGEKTLMQVPSLDFDQF*

>Glyma.20g224000.2.p sequence-type=predicted peptide transcript=Glyma.20g224000.2 locus=Glyma.20g224000 ID=Glyma.20g224000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCERERQKSERERGWCVVCKLLACSILLILIYSEHRKEEVKKREVVTQNTNTNMFDGVPDQFHQFITPRTSLPLHLPFPLHTSGGTPNTTTFPSNFDPYNHPHQLPLQPNNLLHPLHHKDEDKEENTTVPMNLEIQRDQRQQLPELIDPWNNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELEQLYHQGGSGDHHLENTTQPPLQKQDKMGHHALELEVEGDSRNVVDALVTKQNEQSDEALAVEKITKDRKRKRPDRFEMFKCFCESIVHKIMAQQEEMHNKLLEDMMKRDDEKFTREEAWKKQEIEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPASHTLKKVNNDSNINTHITQNPNPSQTENPTLSVAQDTLQVIPSTSSTSTPALPQNPSTYSLNIQNNNNNIPVETNSVLNKGNEKDDVGRRWPKDEVLALINLRCTSVNNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKPVLQSESHLNSPPNQNPEQVTPDQTTQAHESSSQVGSGGGFSVQQQQVDHGGEKTLMQVPSLDFDQF*

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