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Report for Sequence Feature Glyma.20g213900

Feature Type:gene_model
Chromosome:Gm20
Start:45014027
stop:45015011
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g213900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10250.1AT HSP20-like chaperones superfamily protein JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005788GO-cc endoplasmic reticulum lumen EnsemblGenomesN/AIEA
KOG3591 KOG Alpha crystallins JGI N/AIEA
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI N/AIEA
PTHR11527:SF14Panther JGI N/AIEA
PF00011PFAM Hsp20/alpha crystallin family JGI N/AIEA

Proteins Associated with Glyma.20g213900
LocusGene SymbolProtein Name
HSP22.0 22.0 kDa class IV heat shock protein

Expression Patterns of Glyma.20g213900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g213900
ParalogEvidenceComments
Glyma.10g176400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g213900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g35650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g213900
>Glyma.20g213900.1 sequence-type=CDS polypeptide=Glyma.20g213900.1.p locus=Glyma.20g213900 ID=Glyma.20g213900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGCTACAACAACTCAACTTGTTCTTTCTGTTGCTTTGTGTTGCCAAAGCAAACGGGTCTCTGCTCCCATTCATGGATCCTCCCATCACTCTCTTGGCTGATCTCTGGTCCGATCGCTTCCCAGACCCGTTTCGCGTGCTGGAACATATTCCGTTTGGGGTTGACAAAGATGAAGCATCCATGGCCATGTCACCTGCTAGAGTGGACTGGAAGGAGACCCCAGAGGGGCATGTTATAATGCTGGACGTGCCGGGGCTGAAGAGAGAAGAGATAAAGGTAGAGGTGGAAGAGAATAGGGTGCTGAGAGTGAGTGGTGAAAGGAAGAAGGAGGAGGAGAAGAAGGGGGATCACTGGCACAGAGTGGAGAGATCCTATGGCAAGTTCTGGAGGCAGTTCAGGTTGCCACAAAATGTAGACTTGGATTCTGTCAAGGCCAAGCTGGAGAATGGGGTGCTCACTTTGACACTTGACAAGTTGTCACCTGGTAAGATCAAAGGTCCCAGGGTGGTCAGCATTGCTGGGGAGGATCACCAACAAGGTAATCTCAACAATGATGGGGCCAAGCAGGAGCTTTGA
Predicted protein sequences of Glyma.20g213900
>Glyma.20g213900.1.p sequence-type=predicted peptide transcript=Glyma.20g213900.1 locus=Glyma.20g213900 ID=Glyma.20g213900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRLQQLNLFFLLLCVAKANGSLLPFMDPPITLLADLWSDRFPDPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGEDHQQGNLNNDGAKQEL*






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