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Report for Sequence Feature Glyma.20g199100

Feature Type:gene_model
Chromosome:Gm20
Start:43680855
stop:43683974
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g199100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33255.1AT Haloacid dehalogenase-like hydrolase (HAD) superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
KOG3085 KOG Predicted hydrolase (HAD superfamily) JGI N/AIEA
PTHR19288Panther 4-NITROPHENYLPHOSPHATASE-RELATED JGI N/AIEA
PTHR19288:SF15Panther JGI N/AIEA
PF00702PFAM haloacid dehalogenase-like hydrolase JGI N/AIEA
GN7V-65981SoyCyc9-rxn N-acylneuraminate-9-phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g199100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g199100 not represented in the dataset
Glyma.20g199100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g199100
ParalogEvidenceComments
Glyma.10g191200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g199100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g34120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g199100
>Glyma.20g199100.1 sequence-type=CDS polypeptide=Glyma.20g199100.1.p locus=Glyma.20g199100 ID=Glyma.20g199100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCATTGCTCGTATCCAATTGTGCAAAGGCTTTCATCCTCTCGACGCTCCCACAGTCGAAGCGAATGTCCCATCATGCTCCCGGCGTCAAAACGCGCCTGAGGGGTGTCGTTTTCGACATGGACGGCACCCTCACCGTCCCGGTGATCGATTTTCCGGCGATGTACAGGGCGGTTCTGGGCGACGAGGAGTACCTGCGGCTCAAAGCGGAAAACCCTTCCGGCATCGACATTTTGGGCCACATCGAAGGGTGGCCGCCTCACAAACAGCGCAAGGCCTACGACGCCATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAGGAGGGGTTTGATCACTAGGAACACGAAGTCAGCAGTTGATTTATTCCATGAACGGTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCTGATCCAGGTCCACTACTGCATATTTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTAATAATGATTGGAGATAGCCTTAAAGATGATGTGCGCTGTGGAAGGCAAGCAGGAGCCTTTACATGCTTGCTTGATCAAACAGGAGTATATGATTCTCCCAAGTATGCTGATGTTGAATTCAAACCAGATTTCAAGGTGACTTCCCTTGATGAAGTTCACTCAGTTCTGAAGGAAAATTTTGATTTGTCACCATGA
Predicted protein sequences of Glyma.20g199100
>Glyma.20g199100.1.p sequence-type=predicted peptide transcript=Glyma.20g199100.1 locus=Glyma.20g199100 ID=Glyma.20g199100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLLVSNCAKAFILSTLPQSKRMSHHAPGVKTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGDEEYLRLKAENPSGIDILGHIEGWPPHKQRKAYDAIAEVERQGLERLQIMPGCAELCAMLDSKKIRRGLITRNTKSAVDLFHERFGITFSPALSREFRPYKPDPGPLLHICSLWEVQPNEVIMIGDSLKDDVRCGRQAGAFTCLLDQTGVYDSPKYADVEFKPDFKVTSLDEVHSVLKENFDLSP*






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