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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38680.1 | AT | 5'-nucleotidases;magnesium ion binding | JGI | N/A | IEA |
| GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0008253 | GO-mf | 5'-nucleotidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008253 | GO-mf | 5'-nucleotidase activity | JGI | N/A | IEA |
| KOG3128 | KOG | Uncharacterized conserved protein | JGI | N/A | IEA |
| PTHR13045 | Panther | NT5C3 HYDROLASE | JGI | N/A | IEA |
| PF05822 | PFAM | Pyrimidine 5'-nucleotidase (UMPH-1) | JGI | N/A | IEA |
| P165-PWY | SoyCyc9 | superpathway of purines degradation in plants | Plant Metabolic Network | ISS | |
| PWY-5044 | SoyCyc9 | purine nucleotides degradation I (plants) | Plant Metabolic Network | ISS | |
| PWY-5695 | SoyCyc9 | inosine 5'-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-6595 | SoyCyc9 | superpathway of guanosine nucleotides degradation (plants) | Plant Metabolic Network | ISS | |
| PWY-6596 | SoyCyc9 | adenosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| PWY-6606 | SoyCyc9 | guanosine nucleotides degradation II | Plant Metabolic Network | ISS | |
| PWY-6607 | SoyCyc9 | guanosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| PWY-7185 | SoyCyc9 | UTP and CTP dephosphorylation I | Plant Metabolic Network | ISS | |
| PWYQT-4445 | SoyCyc9 | pyrimidine salvage pathway | Plant Metabolic Network | ISS | |
| URSIN-PWY | SoyCyc9 | ureide biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-43385 | SoyCyc9-rxn | 5'-nucleotidase | Plant Metabolic Network | ISS |
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Glyma.20g195000 not represented in the dataset |
Glyma.20g195000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g195000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g33690 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g195000.1 sequence-type=CDS polypeptide=Glyma.20g195000.1.p locus=Glyma.20g195000 ID=Glyma.20g195000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGTCATCGCCTCCAACTTCAAGGCATTTTCGTCACCTCCTTTCGCCAACGCCACTTTTCCTTCTTTTCCCCTTACACTTCCACCACCACAAGGGTATCGTTTTCTAGTTCTAGTTGCGGGAAAAATTTGCAAATGGAAGAAGTGAAGGTTGCTTCAGACTTGTTGGTGGGTGACCCTGCTTCACTGGAGAAGAAAATTGATGCAATTCGTTTGGGTGGTCCCCAGAAGCTTCAGGTGATTGCTGATTTTGATGCCACGTTAACAAAGTTTTGGGTTAATGGAACTCGTGGCCAAACCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCGACTATTGGACTTGAAGAGAAAACGAAGCTCATGGAAGAGTGGTGGGGAAAAACACACGGTCTTCTTGTTGAGGGAGGACTTACATATGATTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAGGAAAGAGATATTCCTGTGTTAATATTCTCAGCCGGGCTTGCTGATATCATTGAAGAGGTCCTAAGGCAGAAACTTCACAGATCCTTCAAGAATGTGAGGATAGTATCCAACAGGATGGTATTTGATGATGATGGCCGCCTTGTATCTTTCAAAGGAAAATTGATTCATAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGCTCCTGTTCATGAGAGATTGGGTGATATGGATGGTCCTACTGACGACAATTCCTCATTGAAGAAGAGAACCAATGTTCTCCTCCTCGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTGAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGTTGTTTTTGTGAATGATGCACCCATGTGGGGAGTTATCAAACTGGTCTCTCATATGTGTTTAAGTGGGAGGTGA
>Glyma.20g195000.1.p sequence-type=predicted peptide transcript=Glyma.20g195000.1 locus=Glyma.20g195000 ID=Glyma.20g195000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSHRLQLQGIFVTSFRQRHFSFFSPYTSTTTRVSFSSSSCGKNLQMEEVKVASDLLVGDPASLEKKIDAIRLGGPQKLQVIADFDATLTKFWVNGTRGQTSHGLLQQGNPEYDAKRQQLYEYYHPLEFSPTIGLEEKTKLMEEWWGKTHGLLVEGGLTYDSIRQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLADIIEEVLRQKLHRSFKNVRIVSNRMVFDDDGRLVSFKGKLIHSLNKNEHALDMAAPVHERLGDMDGPTDDNSSLKKRTNVLLLGDHTGDLGMSDGLNYETRISMGFLNHNVENSLSCYQEAFDVVFVNDAPMWGVIKLVSHMCLSGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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