Report for Sequence Feature Glyma.20g192800
Feature Type: gene_model
Chromosome: Gm20
Start: 43186683
stop: 43190491
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.20g192800
Proteins Associated with Glyma.20g192800
Locus Gene Symbol Protein Name
Lac89 Laccase 89
Expression Patterns of Glyma.20g192800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.20g192800
Paralog Evidence Comments
Glyma.10g197300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.20g192800 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma20g33460 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.20g192800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.20g192800.2 sequence-type=transcript locus=Glyma.20g192800 ID=Glyma.20g192800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTCTCTAACTTTTTAGCAGTTGATAAATTCAAAGCTATTTAAACTGTTAACGCCTTGTTCTTCAAGTGTAACAATCCAAACCAAGAAGCTGTGGTCACGTCTCAATGGCTGCAGGTTCTGCTGGTCCTCAACTGAAACATGTTACATGTGCAATTGTGCTGCTACCATTCTTTGTTACAATGACCACTAGTGCTGATATATTCCTTGATTGGCACGTTTCCGCTGACTTCAATTTAAAGCCTGTGTCCACTGATCAACCGGTAATTACAATCAATGGCATGTTCCCTGGACCCCTTATAAATGCAACAACAAATGATAATATTCATGTCAATGTTTTCAATGATTTGGATGATCCCTTGCTGTTTACATGGAATGGCATACAGCAAAGGCTAGACTCATGGCAAGATGGAGTGTCTGGCACAAACTGCCCTATCCAACCTGGCAAGAATTGGACTTATGATTTCCAAGCCAAAGACCAGATTGGCACATTCTTCTACTTTCCTTCCATCAATTTCCTTAAGGCTGGTGGAGGGTTTGGTCCAATTCGAGTCAACAATCGACCCTTGATTAGCGTTCCTTTTCCAAAACCTGAGGCAGAGTTTGATCTTCTAATTGGTGACTGGTACATCAGTAGCTACAAGGACATTAGGTCCAGGTTGAATACGGCAGATGTTCCTTCTCCTGATTGGATGCTAATAAACGGAAAAGGACCATATATGAACAATCTTTCTCAATCATATGAGACCTTCAATGTTACACAAGGCAAGACATATTTGCTTAGGATATCAAACGTAGGGACAGCCTGGAGCTTCAATTTCAGGATTCAAAATCATCAACTGGTTTTGGTTGAAACTGAAGGTTCTTATGTCAATCAAATAGAGCTGGAGTCTCTTGATGTTCATGTAGGCCAATCCTACTCAGTTCTTGTCACAGCAAACCAAAATGCTGTTGATTACTACATAGTAGCCTCTCCTAAACTGAGTAATGCCACAAATAATAACACTCTTGTTGGCGTTGCTGTGCTTCATTATGACAACTCTACCACACCGGCTAATGGGTCTCTTCCAAGTGGTCCAGATCCATTTGATCTGCAATTCTCCATCAACCAAGCAAAATCCATTAGGTGGAACCTCACCACTGGAGCTGCAAGGCCTAATCCCCAGGGAATGTTCAATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAACGCATCAACAGCAACTATTGATGGATTATCTCGCTATTCTGTCAACAATGTGTCTTACTTGATCCCAGATACACCACTGAAACTAGCTGATTTCTTTTCCAATGGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTAGCTAGTGCATTACATAAAGGGTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGAATGGGGGAAGGAGATTGGAATCCAGAATCCCGGTCAAGTTATAACCTTTATGATCCTGTTGCTCGCTCCACTGTGCAAGTGTACCCTGGAGGGTGGAGTTCAGTGTATGTGTACCCTGACAACCCTGGAATGTGGAACCTAAGATCACAGAACTTGCAAAGCTGGTATTTAGGTGAAGAGCTCTATGTGAGGGTTTATGATGCTGATCCCAACCCTGCCAAGGAGAAGCCACCTCCACAGAATCTCCTTCTATGTGGCAAGTATCAGCCACCAACCCCTCCTCCCTCAGTGTCCCCAGCACCAAATGCTCCATCATCCAACGCATATGCATATAATCCACATAGAACAAGGTATTAGTGCATTATGTGTTGTTACATCATTTATGTTAAATGCTTATAACTGATATGCTGACCTCAGGaggtgtgttggatgattaaggaagaaggaaagaggggaaaggttgctggtttgatcccctttgctaacaaaactaacattCTAACAAATTCTAACAAATTAACATTTACCGATATAAAAAAAATAAAAAATATGCTGATCTCACCTAATGACATAAGGCTTGgttattgttattgttatagactaatatgtgttgtttctgtgtattctttgttatAATAGGTCTCTGATTGCTATGATCACCACTGCTATATGTTTGTTCTATATTGATCTCCATTAATTGAGACGGTCCACCCTTTGCTAAGGAGTTGGAGATATGCACAGACCAGCATAAGGATAAAATTTCTACAGTATTCTTTTTTTTCTTTTTAAGTTTGAACTGTCAAGAATGAAATGTATACATAATATTGGTTACTTATTACTACAGTCATGCTACTTGTTTCAATATATACATGTTAAGATTTGCAGTGTCATTCTTTGGCCACACTTGTTGGATGTTTCTTAATCTATAGAACGGTGGAAAATGATGCATGTTTTAGGTTCAACATGCAAGGCCAT
Coding sequences of Glyma.20g192800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.20g192800.1 sequence-type=CDS polypeptide=Glyma.20g192800.1.p locus=Glyma.20g192800 ID=Glyma.20g192800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCAGGTTCTGCTGGTCCTCAACTGAAACATGTTACATGTGCAATTGTGCTGCTACCATTCTTTGTTACAATGACCACTAGTGCTGATATATTCCTTGATTGGCACGTTTCCGCTGACTTCAATTTAAAGCCTGTGTCCACTGATCAACCGGTAATTACAATCAATGGCATGTTCCCTGGACCCCTTATAAATGCAACAACAAATGATAATATTCATGTCAATGTTTTCAATGATTTGGATGATCCCTTGCTGTTTACATGGAATGGCATACAGCAAAGGCTAGACTCATGGCAAGATGGAGTGTCTGGCACAAACTGCCCTATCCAACCTGGCAAGAATTGGACTTATGATTTCCAAGCCAAAGACCAGATTGGCACATTCTTCTACTTTCCTTCCATCAATTTCCTTAAGGCTGGTGGAGGGTTTGGTCCAATTCGAGTCAACAATCGACCCTTGATTAGCGTTCCTTTTCCAAAACCTGAGGCAGAGTTTGATCTTCTAATTGGTGACTGGTACATCAGTAGCTACAAGGACATTAGGTCCAGGTTGAATACGGCAGATGTTCCTTCTCCTGATTGGATGCTAATAAACGGAAAAGGACCATATATGAACAATCTTTCTCAATCATATGAGACCTTCAATGTTACACAAGGCAAGACATATTTGCTTAGGATATCAAACGTAGGGACAGCCTGGAGCTTCAATTTCAGGATTCAAAATCATCAACTGGTTTTGGTTGAAACTGAAGGTTCTTATGTCAATCAAATAGAGCTGGAGTCTCTTGATGTTCATGTAGGCCAATCCTACTCAGTTCTTGTCACAGCAAACCAAAATGCTGTTGATTACTACATAGTAGCCTCTCCTAAACTGAGTAATGCCACAAATAATAACACTCTTGTTGGCGTTGCTGTGCTTCATTATGACAACTCTACCACACCGGCTAATGGGTCTCTTCCAAGTGGTCCAGATCCATTTGATCTGCAATTCTCCATCAACCAAGCAAAATCCATTAGGTGGAACCTCACCACTGGAGCTGCAAGGCCTAATCCCCAGGGAATGTTCAATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAACGCATCAACAGCAACTATTGATGGATTATCTCGCTATTCTGTCAACAATGTGTCTTACTTGATCCCAGATACACCACTGAAACTAGCTGATTTCTTTTCCAATGGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTAGCTAGTGCATTACATAAAGGGTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGAATGGGGGAAGGAGATTGGAATCCAGAATCCCGGTCAAGTTATAACCTTTATGATCCTGTTGCTCGCTCCACTGTGCAAGTGTACCCTGGAGGGTGGAGTTCAGTGTATGTGTACCCTGACAACCCTGGAATGTGGAACCTAAGATCACAGAACTTGCAAAGCTGGTATTTAGGTGAAGAGCTCTATGTGAGGGTTTATGATGCTGATCCCAACCCTGCCAAGGAGAAGCCACCTCCACAGAATCTCCTTCTATGTGGCAAGTATCAGCCACCAACCCCTCCTCCCTCAGTGTCCCCAGCACCAAATGCTCCATCATCCAACGCATATGCATATAATCCACATAGAACAAGGTCTCTGATTGCTATGATCACCACTGCTATATGTTTGTTCTATATTGATCTCCATTAA
>Glyma.20g192800.2 sequence-type=CDS polypeptide=Glyma.20g192800.2.p locus=Glyma.20g192800 ID=Glyma.20g192800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCAGGTTCTGCTGGTCCTCAACTGAAACATGTTACATGTGCAATTGTGCTGCTACCATTCTTTGTTACAATGACCACTAGTGCTGATATATTCCTTGATTGGCACGTTTCCGCTGACTTCAATTTAAAGCCTGTGTCCACTGATCAACCGGTAATTACAATCAATGGCATGTTCCCTGGACCCCTTATAAATGCAACAACAAATGATAATATTCATGTCAATGTTTTCAATGATTTGGATGATCCCTTGCTGTTTACATGGAATGGCATACAGCAAAGGCTAGACTCATGGCAAGATGGAGTGTCTGGCACAAACTGCCCTATCCAACCTGGCAAGAATTGGACTTATGATTTCCAAGCCAAAGACCAGATTGGCACATTCTTCTACTTTCCTTCCATCAATTTCCTTAAGGCTGGTGGAGGGTTTGGTCCAATTCGAGTCAACAATCGACCCTTGATTAGCGTTCCTTTTCCAAAACCTGAGGCAGAGTTTGATCTTCTAATTGGTGACTGGTACATCAGTAGCTACAAGGACATTAGGTCCAGGTTGAATACGGCAGATGTTCCTTCTCCTGATTGGATGCTAATAAACGGAAAAGGACCATATATGAACAATCTTTCTCAATCATATGAGACCTTCAATGTTACACAAGGCAAGACATATTTGCTTAGGATATCAAACGTAGGGACAGCCTGGAGCTTCAATTTCAGGATTCAAAATCATCAACTGGTTTTGGTTGAAACTGAAGGTTCTTATGTCAATCAAATAGAGCTGGAGTCTCTTGATGTTCATGTAGGCCAATCCTACTCAGTTCTTGTCACAGCAAACCAAAATGCTGTTGATTACTACATAGTAGCCTCTCCTAAACTGAGTAATGCCACAAATAATAACACTCTTGTTGGCGTTGCTGTGCTTCATTATGACAACTCTACCACACCGGCTAATGGGTCTCTTCCAAGTGGTCCAGATCCATTTGATCTGCAATTCTCCATCAACCAAGCAAAATCCATTAGGTGGAACCTCACCACTGGAGCTGCAAGGCCTAATCCCCAGGGAATGTTCAATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAACGCATCAACAGCAACTATTGATGGATTATCTCGCTATTCTGTCAACAATGTGTCTTACTTGATCCCAGATACACCACTGAAACTAGCTGATTTCTTTTCCAATGGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTAGCTAGTGCATTACATAAAGGGTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGAATGGGGGAAGGAGATTGGAATCCAGAATCCCGGTCAAGTTATAACCTTTATGATCCTGTTGCTCGCTCCACTGTGCAAGTGTACCCTGGAGGGTGGAGTTCAGTGTATGTGTACCCTGACAACCCTGGAATGTGGAACCTAAGATCACAGAACTTGCAAAGCTGGTATTTAGGTGAAGAGCTCTATGTGAGGGTTTATGATGCTGATCCCAACCCTGCCAAGGAGAAGCCACCTCCACAGAATCTCCTTCTATGTGGCAAGTATCAGCCACCAACCCCTCCTCCCTCAGTGTCCCCAGCACCAAATGCTCCATCATCCAACGCATATGCATATAATCCACATAGAACAAGGTATTAG
Predicted protein sequences of Glyma.20g192800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.20g192800.1.p sequence-type=predicted peptide transcript=Glyma.20g192800.1 locus=Glyma.20g192800 ID=Glyma.20g192800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAGSAGPQLKHVTCAIVLLPFFVTMTTSADIFLDWHVSADFNLKPVSTDQPVITINGMFPGPLINATTNDNIHVNVFNDLDDPLLFTWNGIQQRLDSWQDGVSGTNCPIQPGKNWTYDFQAKDQIGTFFYFPSINFLKAGGGFGPIRVNNRPLISVPFPKPEAEFDLLIGDWYISSYKDIRSRLNTADVPSPDWMLINGKGPYMNNLSQSYETFNVTQGKTYLLRISNVGTAWSFNFRIQNHQLVLVETEGSYVNQIELESLDVHVGQSYSVLVTANQNAVDYYIVASPKLSNATNNNTLVGVAVLHYDNSTTPANGSLPSGPDPFDLQFSINQAKSIRWNLTTGAARPNPQGMFNVTNVTIIETFILNASTATIDGLSRYSVNNVSYLIPDTPLKLADFFSNGTGVYELDAFSKNTSNANAVRGVFVASALHKGWTEIVLENNLDIIDTWHLDGYSFFVVGMGEGDWNPESRSSYNLYDPVARSTVQVYPGGWSSVYVYPDNPGMWNLRSQNLQSWYLGEELYVRVYDADPNPAKEKPPPQNLLLCGKYQPPTPPPSVSPAPNAPSSNAYAYNPHRTRSLIAMITTAICLFYIDLH*
>Glyma.20g192800.2.p sequence-type=predicted peptide transcript=Glyma.20g192800.2 locus=Glyma.20g192800 ID=Glyma.20g192800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAGSAGPQLKHVTCAIVLLPFFVTMTTSADIFLDWHVSADFNLKPVSTDQPVITINGMFPGPLINATTNDNIHVNVFNDLDDPLLFTWNGIQQRLDSWQDGVSGTNCPIQPGKNWTYDFQAKDQIGTFFYFPSINFLKAGGGFGPIRVNNRPLISVPFPKPEAEFDLLIGDWYISSYKDIRSRLNTADVPSPDWMLINGKGPYMNNLSQSYETFNVTQGKTYLLRISNVGTAWSFNFRIQNHQLVLVETEGSYVNQIELESLDVHVGQSYSVLVTANQNAVDYYIVASPKLSNATNNNTLVGVAVLHYDNSTTPANGSLPSGPDPFDLQFSINQAKSIRWNLTTGAARPNPQGMFNVTNVTIIETFILNASTATIDGLSRYSVNNVSYLIPDTPLKLADFFSNGTGVYELDAFSKNTSNANAVRGVFVASALHKGWTEIVLENNLDIIDTWHLDGYSFFVVGMGEGDWNPESRSSYNLYDPVARSTVQVYPGGWSSVYVYPDNPGMWNLRSQNLQSWYLGEELYVRVYDADPNPAKEKPPPQNLLLCGKYQPPTPPPSVSPAPNAPSSNAYAYNPHRTRY*