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Report for Sequence Feature Glyma.20g183000

Feature Type:gene_model
Chromosome:Gm20
Start:42107275
stop:42111248
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g183000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39140.1AT pseudouridine synthase family protein JGI N/AIEA
GO:0000455GO-bp enzyme-directed rRNA pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0001522GO-bp pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0001522GO-bp pseudouridine synthesis JGI N/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0009451GO-bp RNA modification JGI N/AIEA
GO:0009501GO-cc amyloplast EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0009982GO-mf pseudouridine synthase activity EnsemblGenomesN/AIEA
GO:0009982GO-mf pseudouridine synthase activity JGI N/AIEA
GO:0016866GO-mf intramolecular transferase activity EnsemblGenomesN/AIEA
PTHR21600Panther RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B JGI N/AIEA
PTHR21600:SF2Panther RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED JGI N/AIEA
PF00849PFAM RNA pseudouridylate synthase JGI N/AIEA
PF01479PFAM S4 domain JGI N/AIEA
GN7V-66436SoyCyc9-rxn 23S rRNA pseudouridine2605 synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g183000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g183000 not represented in the dataset
Glyma.20g183000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g183000
ParalogEvidenceComments
Glyma.10g207800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.20g183000
>Glyma.20g183000.1 sequence-type=CDS polypeptide=Glyma.20g183000.1.p locus=Glyma.20g183000 ID=Glyma.20g183000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCAACAACGGCCATTGCAGCACTCTCACTTCACTGCTTCTCCAAATCCCACACACACTTTTCACCCTTTCGCACTCTCCCTCGCATCACATGTTCCTTCTCTTCCTCCATCGAATTCACCATCTCCTTCGCTCCTCCCAAGCCCAAGCCCGAACCCGACGCCTCAAACGATCCCGATGGGCCGCTCCTCATCCCGTGGATCGTCCGGGGCGTGGATGCATTCCAAGGCGGCTCGGCGGTTCTACAACCAAAACATCAAGGAATCCCCGCGGCACGCCTCAGCAAGGTTCTCGCCGCCTCCGGAATTGCGTCGAGGAGAAGCTGTGAAGAGCTTATATTCGAAGGGAAAGTTACGGTGAATGGTTCCGTGTGTAATACGCCTCAGACTAGAGTTGATCCTGCGAAGGATGTTATCTATGTGAATGGGAGCCGGCTTCCGAAGAGGCAGCCTCAGAAGGTTTACCTGGCATTGAACAAACCCAAAGGGTATATATGTTCGTCAGGGGAGAATGAGTCTAAATCTGTGATTAGTTTATTTGATGATTTCTTGAAGAATTGGGATCTAGGGCACCTTGATGTTGCTACTACTGGGTTAATTATTGTGACTAATGATGATTTTGCTCAAAAGCTTTCACATCCTTCATCGGATTTATCAAAAGAATACATTGCAACAGTCGATGGTTTAGTTCACAAGAGGCACTTAATAGCCATAAGTGAGGGAACAACCGTTGAGGGTGTCCATTGTGTACCTGATGTTGTGGAGTTACTTCCACATCAGCCAGAGATGCAAAGAGCTCGAATCCGCATTGTGGTTCATGAAGGTAGGAAACATGAAGTTCGTGAACTCGTCAAAAGTGCTGGACTTGAGATTCATTCATTAAAGCGAGTACGCATTGGTGGGTTTAGACTTCCACCAGACCTCGGGTTAGGAAAGTATATTGAGTTAAATTCAACGAATCTCAACGCATTGGGGTGGAAGAGCTAA
Predicted protein sequences of Glyma.20g183000
>Glyma.20g183000.1.p sequence-type=predicted peptide transcript=Glyma.20g183000.1 locus=Glyma.20g183000 ID=Glyma.20g183000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGATTAIAALSLHCFSKSHTHFSPFRTLPRITCSFSSSIEFTISFAPPKPKPEPDASNDPDGPLLIPWIVRGVDAFQGGSAVLQPKHQGIPAARLSKVLAASGIASRRSCEELIFEGKVTVNGSVCNTPQTRVDPAKDVIYVNGSRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDFLKNWDLGHLDVATTGLIIVTNDDFAQKLSHPSSDLSKEYIATVDGLVHKRHLIAISEGTTVEGVHCVPDVVELLPHQPEMQRARIRIVVHEGRKHEVRELVKSAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNSTNLNALGWKS*






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