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Report for Sequence Feature Glyma.20g180800

Feature Type:gene_model
Chromosome:Gm20
Start:41891638
stop:41898451
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g180800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53260.1AT phenylalanine ammonia-lyase 2 JGI N/AIEA
GO:0006559GO-bp L-phenylalanine catabolic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0009698GO-bp phenylpropanoid metabolic process EnsemblGenomesN/AIEA
GO:0009800GO-bp cinnamic acid biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016841GO-mf ammonia-lyase activity EnsemblGenomesN/AIEA
GO:0016841GO-mf ammonia-lyase activity JGI N/AIEA
GO:0045548GO-mf phenylalanine ammonia-lyase activity EnsemblGenomesN/AIEA
KOG0222 KOG Phenylalanine and histidine ammonia-lyase JGI N/AIEA
PTHR10362Panther HISTIDINE AMMONIA-LYASE JGI N/AIEA
PTHR10362:SF3Panther JGI N/AIEA
PF00221PFAM Aromatic amino acid lyase JGI N/AIEA
PWY-1121SoyCyc9 suberin monomers biosynthesis Plant Metabolic Network ISS
PWY-6457SoyCyc9 trans-cinnamoyl-CoA biosynthesis Plant Metabolic Network ISS
PWY-7186SoyCyc9 superpathway of scopolin and esculin biosynthesis Plant Metabolic Network ISS
PWY1F-467SoyCyc9 phenylpropanoid biosynthesis, initial reactions Plant Metabolic Network ISS
GN7V-55390SoyCyc9-rxn phenylalanine/tyrosine ammonia-lyase Plant Metabolic Network ISS

Proteins Associated with Glyma.20g180800
LocusGene SymbolProtein Name
PAL2.2 phenylalanine ammonia-lyase 2.2

Expression Patterns of Glyma.20g180800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g180800 not represented in the dataset
Glyma.20g180800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g180800
ParalogEvidenceComments
Glyma.10g209800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g180800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g32135 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g180800
>Glyma.20g180800.1 sequence-type=CDS polypeptide=Glyma.20g180800.1.p locus=Glyma.20g180800 ID=Glyma.20g180800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATATTCAAAGGAAATTCTTAGCAATGGCAATGCAAATGGTTCATTGAATCTTTGCAATGGTAGCACGGACCCACTTAACTGGGGCATGGCTGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGAATGGTGGAGGACTACCGTAACCCCGTGGTGAAGTTGGGTGGCAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCCGGCACCACGGCGGAGTTACGGTGGAGCTGGCCAAGGAGACCCGCCACGGTGTCAAGGCCAGCAGTGACTGGGTCATGGATAGCATGGTTAAGGGCACTGATAGTTACGGAGTCACCACAGGGTTCGGTGCAACCTCACATAGAAGAACCAAACAAGGTGCTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGTAATGGCACAGAATCTTGTCACACCTTACCTCACTCAGCTACAAGGGCAGCCATGTTGGTTAGAATCAATACCTTGCTTCAAGGATATTCAGGCATTAGATTTGAAATCATGGAGGCCATTTCTAAGTTTTTGAACCATAACATAACCCCATGTCTTCCTCTTCGTGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGACAAGTTCTTAATGCTAAAGAGGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTAAATGGCACTGCAGTAGGATCTGGCTTGGCTTCCGTGGTCCTTTTTGAGGCAAACTTACTTGTCATTCTTTCTGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAGTTCACCGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATCATGGAACATATATTAGATGGAAGCTCATATTGTAAGGCAGCACGGAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTACATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTAGCCATTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTAAATGACTTCTACAACAATGGTTTGCCTTCAAATCTAACAGCTAGTCGCAATCCGAGCTTAGATTATGGATTCAAAGGTGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGCGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGCTTAGTTTCTTCAAGAAAGACAGCTGAAGCAATAGATATATTAAAGCTTATGTCATCCACTTTCTTAGTTGCTTTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTTAGGAATACCGTTAGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTCTGTGAGAAAGACTTGCTTAAAATTGTTGATCGTGAGTATGTCTATGCTTACATTGATGACCCCTGTAGTGCAACCTACCCTCTGATGCAAAAATTGAGATTAGTCCTAGTTGATCATGCATTACAAAATGGTGACAAAGAGGTGAATTCAAGTACCTCAATTTTCCAAAAGATTGGTGCCTTTGAGGAAGAGCTCAATGCCCTTTTGCCAAAAGAGGTGGAAAGTTCTAGGATTGAAGTTGAGAATGGAAATCCTGCCATTCCTAACCGAATTAAGGAATGCAGATCTTACCCATTATATAAGTTTGTTAGAGAAAATTTGGGTACAACTTTGCTAACAGGAGAGAAAGTCAAGTCACCTGGTGAGGAATTTGATAAGGTATTTACTGCATTGTGTGAAGGGAAGTTAATTGATCCTTTGTTGGACTGTCTAAAAGAGTGGAAGGGTGCTCCTCTACCAATATGCTGA
Predicted protein sequences of Glyma.20g180800
>Glyma.20g180800.1.p sequence-type=predicted peptide transcript=Glyma.20g180800.1 locus=Glyma.20g180800 ID=Glyma.20g180800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYSKEILSNGNANGSLNLCNGSTDPLNWGMAAEALKGSHLDEVKRMVEDYRNPVVKLGGKSLTVSQVAAVATRHHGGVTVELAKETRHGVKASSDWVMDSMVKGTDSYGVTTGFGATSHRRTKQGAALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAISKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASVVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYCKAARKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVRNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVYAYIDDPCSATYPLMQKLRLVLVDHALQNGDKEVNSSTSIFQKIGAFEEELNALLPKEVESSRIEVENGNPAIPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEEFDKVFTALCEGKLIDPLLDCLKEWKGAPLPIC*






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