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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04220.2 | AT | Calcium-dependent lipid-binding (CaLB domain) family protein | JGI | N/A | IEA |
| GO:0006869 | GO-bp | lipid transport | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0008289 | GO-mf | lipid binding | EnsemblGenomes | N/A | IEA |
| PTHR10774 | Panther | EXTENDED SYNAPTOTAGMIN-RELATED | JGI | N/A | IEA |
| PTHR10774:SF2 | Panther | JGI | N/A | IEA | |
| PF00168 | PFAM | C2 domain | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| C2-179 | C2 domain containing protein gene 179 |
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Glyma.20g180600 not represented in the dataset |
Glyma.20g180600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g210000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g32110 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g180600.1 sequence-type=CDS polypeptide=Glyma.20g180600.1.p locus=Glyma.20g180600 ID=Glyma.20g180600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGGTTGGTGAGCAGTTTCTTGGGGATTCTTGGTTTCGCCGTTGGAATACCTCTTGGCCTCTTTGTGGGGTTCTTTCTCTTTGTCTACTCAGAAACCAAACATGTCAAGGACCCTGTTGTTAGGCCTATAAGTGAATTAGGCCCAAATGCTTTGCAGGAACTTCTGCCCGAGATTCCTCTCTGGGTGAAGACGCCTGATTATGAACGAGTTGATTGGTTGAACAAGTTTTTATTGGATACGTGGCCTTTCTTAGATACGGCAATTTGTAAGATTATTAGAAGCAGGGCTCAACCAATATTTTTCGAATACATTGGCAAGTATCAGATCAAAGCGATTGAGTTTGATAAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTGGTATTAAAGTTTTAGAAACAAATGGAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGCAATCCAGAAATAGTGTTGTCGGTGTATGTGGCCTCTTTGAAGATCACCGTTCAGTTGGTAGACTTACAAATATTTGCAGCACCACGAGTAACTTTAAGACCTTTGGTGCCAACATTTCCATGTTTTGCAAATATTGTGGTATCTTTGATGGAGAAGCCTCATGTGGATTTTGGGATGAACGTATTAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAGGAAACAATAAAAAAACAAGTTGCAAACCTCTATCTCTGGCCTCAAACCCTGGAAATTCCTATTCTTGATGAATCATCGGTGGCAATAAAGAAGCCTGTGGGGATATTACATGTGAATGTGGTTCGTGCACAAAAGCTTTTAAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTTAAACTAAGCTTGACAGGAGACAAACTTCCAGCAAAAAAAACCACTGTCAAGAGAAAGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGCTTGTTGTAAAGGATCCTCAATCTCAAGTTCTCCAATTACAAGTTTATGACTGGGACAAGGTTGGCGGACATGACAAGCTGGGAATGCAGTTAGTCCCTCTTAAAGTGTTAAAGGCGTATGAGAATAAAGAATTTACACTTGATTTACTCAAGGACACAAATCTCAATGAAACTCCACGTAAGAAGCCTAGAGGTAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAAAGAAGATAGTAGCAAGTTTGGTGGACCTTCAGAAGGATATAGCAGGAAGGAAAGTGGAATTGATATCGTATCTGATGATGAGGTCCAAGAAGGAGCTGGTTTGCTTTCAATTGTGATCCAAGAGGCTGAAGAGGTTGAGGGGGACCATCACAACAACCCATTTGCAGTTCTGACCTTTAGAGGTGAAAAGAAAAGGACAAAGATGATGAAGAAAACTCGTCACCCGCGTTGGAATGAAGAATTCCAATTCATGCTGGAGGAGCCTCCTCAACATGAGAAGATACATATTGAGGTTATGAGCAAGAGGAAGAACTTTAGTTTTCTGCCAAAGAAATCATTGGGGCATGTGGAGATTAACCTAAGAGATGTGGTGCACAATGGTCACATTAATGATAAGTACCATCTAATAAATTCAAGGAATGGGGTGATGCATGTTGAGATAAGATGGAAGGTGGTTTAA
>Glyma.20g180600.1.p sequence-type=predicted peptide transcript=Glyma.20g180600.1 locus=Glyma.20g180600 ID=Glyma.20g180600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGLVSSFLGILGFAVGIPLGLFVGFFLFVYSETKHVKDPVVRPISELGPNALQELLPEIPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFFEYIGKYQIKAIEFDKLSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAAPRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSIPGLYRFVQETIKKQVANLYLWPQTLEIPILDESSVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLKAYENKEFTLDLLKDTNLNETPRKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGIDIVSDDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKMMKKTRHPRWNEEFQFMLEEPPQHEKIHIEVMSKRKNFSFLPKKSLGHVEINLRDVVHNGHINDKYHLINSRNGVMHVEIRWKVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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