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Report for Sequence Feature Glyma.20g177400

Feature Type:gene_model
Chromosome:Gm20
Start:41468079
stop:41470200
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g177400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32915.1AT JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006450GO-bp regulation of translational fidelity EnsemblGenomesN/AIEA
GO:0006450GO-bp regulation of translational fidelity JGI N/AIEA
GO:0032543GO-bp mitochondrial translation EnsemblGenomesN/AIEA
GO:0070681GO-bp glutaminyl-tRNAGln biosynthesis via transamidation EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0030956GO-cc glutamyl-tRNA(Gln) amidotransferase complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0016884GO-mf carbon-nitrogen ligase activity, with glutamine as amido-N-donor EnsemblGenomesN/AIEA
GO:0050567GO-mf glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity EnsemblGenomesN/AIEA
PTHR13373Panther FROUNT PROTEIN-RELATED JGI N/AIEA
PTHR13373:SF14Panther JGI N/AIEA
PF02686PFAM Glu-tRNAGln amidotransferase C subunit JGI N/AIEA
GN7V-66606SoyCyc9-rxn asparaginyl-tRNA synthase (glutamine-hydrolysing) Plant Metabolic Network ISS

Expression Patterns of Glyma.20g177400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g177400 not represented in the dataset
Glyma.20g177400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g177400
ParalogEvidenceComments
Glyma.10g214200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g177400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g31750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g177400
>Glyma.20g177400.2 sequence-type=transcript locus=Glyma.20g177400 ID=Glyma.20g177400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATACGAAGATGACTAGCAAAGGGTTGCTGAGAGGAGCTTCGTTAACTGCAAACGCAGTTTGGCATAGAAGCAGTTTCTTCCCAAAGGTAACGGTTAGCGTCCACCCCAAGTTGGTGAAATTTCAGAGCTTCTCATCAACCACCGCTTGCTCCTCTCTTCCACCCCCGGATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGGTTTGGACAGCTGCAGGGTATTGATCTTGAAAGTGTTGAACCCTCGATCAGAGCAGGTTCTCTATGAACATATAATATCACTTTCATCATCTATCATGACTATCAATGATTTCATATCCTTACTTTGGATTTTATGTACTGTTTGATTACATTATACCTTGATGTGAAAGCAAGTTCTTTCATCTTCTTTTGACTTGGGGACTTGGAAGGGTTGTAAACTGTGATTGTGTTACATTCTTTCAGCTGAGAATGCATTGTTAGTGTGTTTGTTTTATGCTAATCCTGTTTTCGAAGGCACATCAAACGTCAAATCCTCAATCCCATGCTCACGGATTAATTCCTGGTCCATTTTAAGTGGTTGACATCTCTCAACAGATATTCTTCCATATACATAGGTTTAGGGATCGAACTTCTAACCTCATGCTTAAGTCACATGGTTATTTGTCAACTATACCAGACCACATTGGTACACAGCCATTCACTGAGAAATGCCAGTGATATTGCTGCCTTTTACAATATAACAAATCAATACTTTGCCACTTTGGCAAATGAGCGGTATTATCCATTTCTAGTCATTGCTTTCTTATACTTCAACTTGGTCATGCCAGTTTGTCCAAATTGTTTGGGTTGGTTGTCTTTCCTCTATACTTTTTCATGAACAACTATAAGGGAACCATACAATATCTATGTTCAAGTGATTTTCAGTTAATGTGTCTTTGTACAAAATTTTTATGCACATGAGTTGTTTTACACTTTTACATGACTGGCAGAAAGCATCATTTGCTCATTGATTTGGCTTCATATTTTTATTTGCTTATTCTTTCTGTGTTATCTGTAGAGACTGAAAACAATTTGCGTGGTAATGCTCCTGAAACATTTGACCATAGGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTTCCGAGGGTCTTAAGCATGGACTAAAGTTAAAATTGCTTAGACGAGTTATTTGGTAGAAGGAAAACACATTCAGACTATTTTGTGTTGTACTTTGAAGTTTGAATCTTTTTGGTTCTTTGTGACCCAGCTCTTATTTTGAATTTTTATGAGGGAATTCAGTTCGGCTCGTGAACTCTGCTCTTGCACTAAGTTTTGTTTTATGATGAACATTCGCAATTTTTTTCTTCTGTAACGAGATATCATGGGGGAATATATACAATTCTCCTAAATTTTAAATGGAGAAGGGtacaacagaaaacacaataaataaaaaatgaagtgtataatcata

>Glyma.20g177400.3 sequence-type=transcript locus=Glyma.20g177400 ID=Glyma.20g177400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATACGAAGATGACTAGCAAAGGGTTGCTGAGAGGAGCTTCGTTAACTGCAAACGCAGTTTGGCATAGAAGCAGTTTCTTCCCAAAGGTAACGGTTAGCGTCCACCCCAAGTTGGTGAAATTTCAGAGCTTCTCATCAACCACCGCTTGCTCCTCTCTTCCACCCCCGGATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGATTGTTTTTGCAGTGAGCCAAACTTTTGAATTTGGATTGAACTGTCTTGTGTGGCAGGTTTGGACAGCTGCAGGGTATTGATCTTGAAAGTGTTGAACCCTCGATCAGAGCAGAGACTGAAAACAATTTGCGTGGTAATGCTCCTGAAACATTTGACCATAGGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTTCCGAGGGTCTTAAGCATGGACTAAAGTTAAAATTGCTTAGACGAGTTATTTGGTAGAAGGAAAACACATTCAGACTATTTTGTGTTGTACTTTGAAGTTTGAATCTTTTTGGTTCTTTGTGACCCAGCTCTTATTTTGAATTTTTATGAGGGAATTCAGTTCGGCTCGTGAACTCTGCTCTTGCACTAAGTTTTGTTTTATGATGAACATTCGCAATTTTTTTCTTCTGTAACGAGATATCATGGGGGAATATATACAATTCTCCTAAATTTTAAATGGAGAAGGGtacaacagaaaacacaataaataaaaaatgaagtgtataatcata
Coding sequences of Glyma.20g177400
>Glyma.20g177400.1 sequence-type=CDS polypeptide=Glyma.20g177400.1.p locus=Glyma.20g177400 ID=Glyma.20g177400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTAGCAAAGGGTTGCTGAGAGGAGCTTCGTTAACTGCAAACGCAGTTTGGCATAGAAGCAGTTTCTTCCCAAAGGTAACGGTTAGCGTCCACCCCAAGTTGGTGAAATTTCAGAGCTTCTCATCAACCACCGCTTGCTCCTCTCTTCCACCCCCGGATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGGTTTGGACAGCTGCAGGGTATTGATCTTGAAAGTGTTGAACCCTCGATCAGAGCAGAGACTGAAAACAATTTGCGTGGTAATGCTCCTGAAACATTTGACCATAGGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTTCCGAGGGTCTTAAGCATGGACTAA

>Glyma.20g177400.2 sequence-type=CDS polypeptide=Glyma.20g177400.2.p locus=Glyma.20g177400 ID=Glyma.20g177400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTAGCAAAGGGTTGCTGAGAGGAGCTTCGTTAACTGCAAACGCAGTTTGGCATAGAAGCAGTTTCTTCCCAAAGGTAACGGTTAGCGTCCACCCCAAGTTGGTGAAATTTCAGAGCTTCTCATCAACCACCGCTTGCTCCTCTCTTCCACCCCCGGATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGGTTTGGACAGCTGCAGGGTATTGATCTTGAAAGTGTTGAACCCTCGATCAGAGCAGGTTCTCTATGA

>Glyma.20g177400.3 sequence-type=CDS polypeptide=Glyma.20g177400.3.p locus=Glyma.20g177400 ID=Glyma.20g177400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTAGCAAAGGGTTGCTGAGAGGAGCTTCGTTAACTGCAAACGCAGTTTGGCATAGAAGCAGTTTCTTCCCAAAGGTAACGGTTAGCGTCCACCCCAAGTTGGTGAAATTTCAGAGCTTCTCATCAACCACCGCTTGCTCCTCTCTTCCACCCCCGGATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGA
Predicted protein sequences of Glyma.20g177400
>Glyma.20g177400.1.p sequence-type=predicted peptide transcript=Glyma.20g177400.1 locus=Glyma.20g177400 ID=Glyma.20g177400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSKGLLRGASLTANAVWHRSSFFPKVTVSVHPKLVKFQSFSSTTACSSLPPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGIDLESVEPSIRAETENNLRGNAPETFDHRDALIASVPSYEEPYIKVPRVLSMD*

>Glyma.20g177400.2.p sequence-type=predicted peptide transcript=Glyma.20g177400.2 locus=Glyma.20g177400 ID=Glyma.20g177400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSKGLLRGASLTANAVWHRSSFFPKVTVSVHPKLVKFQSFSSTTACSSLPPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGIDLESVEPSIRAGSL*

>Glyma.20g177400.3.p sequence-type=predicted peptide transcript=Glyma.20g177400.3 locus=Glyma.20g177400 ID=Glyma.20g177400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSKGLLRGASLTANAVWHRSSFFPKVTVSVHPKLVKFQSFSSTTACSSLPPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIE*






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