Glyma.20g173100

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Report for Sequence Feature Glyma.20g173100

Feature Type:	gene_model
Chromosome:	Gm20
Start:	41064057
stop:	41069281
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g173100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71840.1	AT	transducin family protein / WD-40 repeat family protein	JGI	N/A	IEA
GO:0042273	GO-bp	ribosomal large subunit biogenesis	EnsemblGenomes	N/A	IEA
GO:0030687	GO-cc	preribosome, large subunit precursor	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0051082	GO-mf	unfolded protein binding	EnsemblGenomes	N/A	IEA
KOG0296	KOG	Angio-associated migratory cell protein (contains WD40 repeats)	JGI	N/A	IEA
PTHR19857	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR19857:SF16	Panther		JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Expression Patterns of Glyma.20g173100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g173100 not represented in the dataset	Glyma.20g173100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g173100

Paralog	Evidence	Comments
Glyma.10g218500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g173100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g31330	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g173100

Limit To All Plant Sequences

>Glyma.20g173100.2 sequence-type=transcript locus=Glyma.20g173100 ID=Glyma.20g173100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAACCCGTCTCTTCTGCAGACCTGCAAATTGCAGTCACTCACGTACACGCCCACCTCCTACCCTTTGTTCGGATTCATCCATTTGATTTTGAGCGCATTTTATATTGTTTTTCCCTTCCTCAGTCTCATTCTTCTTTTTCTCTGTCTTGGAATCATCAAAATACGATGCCTCAATTATCTCCCTGCAGTCCAGTGCGTGAGAAACACACCTTTGATGTGTCCCATAATGCCGGACGAGAAGAAAATCACCAGAGTCAGACTGATTCAGTTCAACTTGGCAGAGGTTAGGGATTGGAGGGATATTGTCGGTGATTCAAGTTGGCAGGGGAATACAGAGTGCGAGAGATGGCGATTGTGACCTCATGTTCTTGATCGATTAAAGGAGGGGTTCGGTGAAGGAGAAGGTAAAGGAAGCATATGTTTCTTTCTATGCCGGACGACACTAAACTCCAGAATTAAATTTCGGAGAAAGAAAAGTTGAAAGTGGGTGCAGAAGTAAAAATCGAGGTGAAATAGTAATAGCCCTTCAGAATTTAGGTTAGGCCCAACCCGAGGAGTCATGCGCCAACCTCATAAACTGTTTTGAAGTCCTTCTCCATCGTTGCTTTGCTTTGGTGCAAAAGAGAGGAACAGAACAGAACTGAGAGAAGCAAGTGAAACACTCAATCACCTAGGCTAAAATCGTCTCGTCTTCATTCCTTTTTTTTCCGGTTTAGAGAATTGAAAAGATTTCATTGATAATTGAGCAAACACAATGAGTGCTCCACCTCATCATGATGATGACGACGACAACGAAGAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCCTCGAAGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACCGGGGAGTTGTACTCAGTTGCCTGCAGCCCAACAGATGCAGACTTGGTGGCTACTGCAGGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTTTGAGCTTCAAGGTCACGAAGAATCTGTATCCAGTTTAGCTTTTAGCTATGATGGACAGTGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAAAAAATTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAATACATTTATTGGTCATGGTGATAGTGTAACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACCTTGAGAATATGGAATCCAAAAACTGGAGAAAGCACTCATGTTGTGCGGGGCCATCCATATCATACCGAGGGATTAACATGCTTGACAATAAATTCAACTTCAACTCTTGCTCTTTCTGGTTCTAAGGATGGATCGGTCCATATTGTGAATATCACCACAGGAAGAGTTGTTGATAATAATGCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCGTCTTATGTGGCTTCTGGTTGTGTGGATGGTAAGGTGAGATTGTGGGACAGCCGGTCTGGTGAATGCGTAAAAACATTGAAGGGGCACTCTGATGCCATTCAGTCTCTTTCTGTGTCTTCTAATCGCAATTACCTTGTCTCGGCCTCGGTTGATGGAACAGCTTGTGCTTTTGAGGTTGAAAATTTTCGGTGAACAATCCCTGTTGTATTATTGCATAGGATGAGGTTGTCATTCATCCAAGCAAATCCCTCTGTGTTTATGTCCTTGGAGGAGGGGATGTTACCTACAGAAATCATATTACATGAGCTTTTCCTGGACCCAGACAATCATATTGAACAAAAGGCTGGATATTTTTTTCGAAGATTATTTTTTATCTTTAACATTATTGGTTTTGAATTATAATGTTCATACTTAGAGAATTGTGTATTCAATGAAGGTGGGAATTTTTCCTAACAGATAATTATTATATGTACAAGTTTTTCTTAGGGATTATTACATGCACAAGTTAACGGTTACCGGGAAACA

>Glyma.20g173100.3 sequence-type=transcript locus=Glyma.20g173100 ID=Glyma.20g173100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAACCCGTCTCTTCTGCAGACCTGCAAATTGCAGTCACTCACGTACACGCCCACCTCCTACCCTTTGTTCGGATTCATCCATTTGATTTTGAGCGCATTTTATATTGTTTTTCCCTTCCTCAGTCTCATTCTTCTTTTTCTCTGTCTTGGAATCATCAAAATACGATGCCTCAATTATCTCCCTGCAGTCCAGTGCGTGAGAAACACACCTTTGATGTGTCCCATAATGCCGGACGAGAAGAAAATCACCAGAGTCAGACTGATTCAGTTCAACTTGGCAGAGGTTAGGGATTGGAGGGATATTGTCGGTGATTCAAGTTGGCAGGGGAATACAGAGTGCGAGAGATGGCGATTGTGACCTCATGTTCTTGATCGATTAAAGGAGGGGTTCGGTGAAGGAGAAGGTAAAGGAAGCATATGTTTCTTTCTATGCCGGACGACACTAAACTCCAGAATTAAATTTCGGAGAAAGAAAAGTTGAAAGTGGGTGCAGAAGTAAAAATCGAGGTGAAATAGTAATAGCCCTTCAGAATTTAGGTTAGGCCCAACCCGAGGAGTCATGCGCCAACCTCATAAACTGTTTTGAAGTCCTTCTCCATCGTTGCTTTGCTTTGGTGCAAAAGAGAGGAACAGAACAGAACTGAGAGAAGCAAGTGAAACACTCAATCACCTAGGCTAAAATCGTCTCGTCTTCATTCCTTTTTTTTCCGGTTTAGAGAATTGAAAAGATTTCATTGATAATTGAGCAAACACAATGAGTGCTCCACCTCATCATGATGATGACGACGACAACGAAGAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCCTCGAAGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACCGGGGAGTTGTACTCAGTTGCCTGCAGCCCAACAGATGCAGACTTGGTGGCTACTGCAGGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTTTGAGCTTCAAGGTCACGAAGAATCTGTATCCAGTTTAGCTTTTAGCTATGATGGACAGTGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAAAAAATTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAATACATTTATTGGTCATGGTGATAGTGTAACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACCTTGAGAATATGGAATCCAAAAACTGGAGAAAGCACTCATGTTGTGCGGGGCCATCCATATCATACCGAGGGATTAACATGCTTGACAATAAATTCAACTTCAACTCTTGCTCTTTCTGGTTCTAAGGATGGATCGGTCCATATTGTGAATATCACCACAGGAAGAGTTGTTGATAATAATGCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCGTCTTATGTGGCTTCTGGTTGTGTGGATGGTAAGGTGAGATTGTGGGACAGCCGGTCTGGTGAATGCGTAAAAACATTGAAGGGGCACTCTGATGCCATTCAGTCTCTTTCTGTGTCTTCTAATCGCAATTACCTTGTCTCGGCCTCGGTTGATGGAACAGCTTGTGCTTTTGAGGTTGAAAATTTTCGGTGAACAATCCCTGTTGTATTATTGCATAGGATGAGGTTGTCATTCATCCAAGCAAATCCCTCTGTGTTTATGTCCTTGGAGGAGGGGATGTTACCTACAGAAATCATATTACATGAGCTTTTCCTGGACCCAGACAATCATATTGAACAAAAGGCTGGATATTTTTTTCGAAGATTATTTTTTATCTTTAACATTATTGGTTTTGAATTATAATGTTCATACTTAGAGAATTGTGTATTCAATGAAGGTGGGAATTTTTCCTAACAGATAATTATTATATGTACAAGTTTTTCTTAGGGATTATTACATGCACAAGTTAACGGTTACCGGGAAACA

Coding sequences of Glyma.20g173100

Limit To All Plant Sequences

>Glyma.20g173100.1 sequence-type=CDS polypeptide=Glyma.20g173100.1.p locus=Glyma.20g173100 ID=Glyma.20g173100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGCTCCACCTCATCATGATGATGACGACGACAACGAAGAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCCTCGAAGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACCGGGGAGTTGTACTCAGTTGCCTGCAGCCCAACAGATGCAGACTTGGTGGCTACTGCAGGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTTTGAGCTTCAAGGTCACGAAGAATCTGTATCCAGTTTAGCTTTTAGCTATGATGGACAGTGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAAAAAATTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAATACATTTATTGGTCATGGTGATAGTGTAACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACCTTGAGAATATGGAATCCAAAAACTGGAGAAAGCACTCATGTTGTGCGGGGCCATCCATATCATACCGAGGGATTAACATGCTTGACAATAAATTCAACTTCAACTCTTGCTCTTTCTGGTTCTAAGGATGGATCGGTCCATATTGTGAATATCACCACAGGAAGAGTTGTTGATAATAATGCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCGTCTTATGTGGCTTCTGGTTGTGTGGATGGTAAGGTGAGATTGTGGGACAGCCGGTCTGGTGAATGCGTAAAAACATTGAAGGGGCACTCTGATGCCATTCAGTCTCTTTCTGTGTCTTCTAATCGCAATTACCTTGTCTCGGCCTCGGTTGATGGAACAGCTTGTGCTTTTGAGGTTGAAAATTTTCGGTGA

>Glyma.20g173100.2 sequence-type=CDS polypeptide=Glyma.20g173100.2.p locus=Glyma.20g173100 ID=Glyma.20g173100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGCTCCACCTCATCATGATGATGACGACGACAACGAAGAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCCTCGAAGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACCGGGGAGTTGTACTCAGTTGCCTGCAGCCCAACAGATGCAGACTTGGTGGCTACTGCAGGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTTTGAGCTTCAAGGTCACGAAGAATCTGTATCCAGTTTAGCTTTTAGCTATGATGGACAGTGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAAAAAATTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAATACATTTATTGGTCATGGTGATAGTGTAACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACCTTGAGAATATGGAATCCAAAAACTGGAGAAAGCACTCATGTTGTGCGGGGCCATCCATATCATACCGAGGGATTAACATGCTTGACAATAAATTCAACTTCAACTCTTGCTCTTTCTGGTTCTAAGGATGGATCGGTCCATATTGTGAATATCACCACAGGAAGAGTTGTTGATAATAATGCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGGATGGAGTGA

>Glyma.20g173100.3 sequence-type=CDS polypeptide=Glyma.20g173100.3.p locus=Glyma.20g173100 ID=Glyma.20g173100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGCTCCACCTCATCATGATGATGACGACGACAACGAAGAAGTTTTCCTTGATGAGTCTGACATCATCCATGAAGTTGCCATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTCCTCGAAGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACCGGGGAGTTGTACTCAGTTGCCTGCAGCCCAACAGATGCAGACTTGGTGGCTACTGCAGGCGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGGGATTGGGCTTTTGAGCTTCAAGGTCACGAAGAATCTGTATCCAGTTTAGCTTTTAGCTATGATGGACAGTGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTCTGGGATGTATCTGGAAATTTGGAAGGTAAAAAATTTGAAGGACCTGGAGGGGGCATTGAGTGGCTTAGGTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTCAGCATTTGGATGTGGAATACTGATAATGCTGCCTTACTTAATACATTTATTGGTCATGGTGATAGTGTAACCTGTGGTGATTTTACTCCCGATGGGAAAATAATATGTACTGGTTCTGATGATGCAACCTTGAGAATATGGAATCCAAAAACTGGAGAAAGCACTCATGTTGTGCGGGGCCATCCATATCATACCGAGGGATTAACATGCTTGACAATAAATTCAACTTCAACTCTTGCTCTTTCTGGTTCTAAGGATGGATCGGTCCATATTGTGAATATCACCACAGGAAGAGTTGTTGATAATAATGCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCGTCTTATGTGGCTTCTGGTTGTGTGGATGGTAAGGTGAGATTGTGGGACAGCCGGTCTGGTGAATGCGTAAAAACATTGAAGGGGCACTCTGATGCCATTCAGTCTCTTTCTGTGTCTTCTAATCGCAATTACCTTGTCTCGGCCTCGGTTGATGGAACAGCTTGTGCTTTTGAGGTTGAAAATTTTCGGTGA

Predicted protein sequences of Glyma.20g173100

Limit To All Plant Sequences

>Glyma.20g173100.1.p sequence-type=predicted peptide transcript=Glyma.20g173100.1 locus=Glyma.20g173100 ID=Glyma.20g173100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAPPHHDDDDDNEEVFLDESDIIHEVAMDNEDLPDADDDSELLEEDEDGDFVHKFTAHTGELYSVACSPTDADLVATAGGDDRGFLWKIGQGDWAFELQGHEESVSSLAFSYDGQCLASGSLDGIIKVWDVSGNLEGKKFEGPGGGIEWLRWHPRGHILLAGSEDFSIWMWNTDNAALLNTFIGHGDSVTCGDFTPDGKIICTGSDDATLRIWNPKTGESTHVVRGHPYHTEGLTCLTINSTSTLALSGSKDGSVHIVNITTGRVVDNNALASHSDSIECVGFAPSGSWAAVGGMDKKLIIWDIEHLLPRGTCEHEDGVTCLAWLGASYVASGCVDGKVRLWDSRSGECVKTLKGHSDAIQSLSVSSNRNYLVSASVDGTACAFEVENFR*

>Glyma.20g173100.2.p sequence-type=predicted peptide transcript=Glyma.20g173100.2 locus=Glyma.20g173100 ID=Glyma.20g173100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAPPHHDDDDDNEEVFLDESDIIHEVAMDNEDLPDADDDSELLEEDEDGDFVHKFTAHTGELYSVACSPTDADLVATAGGDDRGFLWKIGQGDWAFELQGHEESVSSLAFSYDGQCLASGSLDGIIKVWDVSGNLEGKKFEGPGGGIEWLRWHPRGHILLAGSEDFSIWMWNTDNAALLNTFIGHGDSVTCGDFTPDGKIICTGSDDATLRIWNPKTGESTHVVRGHPYHTEGLTCLTINSTSTLALSGSKDGSVHIVNITTGRVVDNNALASHSDSIECVGFAPRME*

>Glyma.20g173100.3.p sequence-type=predicted peptide transcript=Glyma.20g173100.3 locus=Glyma.20g173100 ID=Glyma.20g173100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAPPHHDDDDDNEEVFLDESDIIHEVAMDNEDLPDADDDSELLEEDEDGDFVHKFTAHTGELYSVACSPTDADLVATAGGDDRGFLWKIGQGDWAFELQGHEESVSSLAFSYDGQCLASGSLDGIIKVWDVSGNLEGKKFEGPGGGIEWLRWHPRGHILLAGSEDFSIWMWNTDNAALLNTFIGHGDSVTCGDFTPDGKIICTGSDDATLRIWNPKTGESTHVVRGHPYHTEGLTCLTINSTSTLALSGSKDGSVHIVNITTGRVVDNNALASHSDSIECVGFAPSGSWAAVGGMDKKLIIWDIEHLLPRGTCEHEDGVTCLAWLGASYVASGCVDGKVRLWDSRSGECVKTLKGHSDAIQSLSVSSNRNYLVSASVDGTACAFEVENFR*

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