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Report for Sequence Feature Glyma.20g172700

Feature Type:gene_model
Chromosome:Gm20
Start:41025526
stop:41028921
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g172700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48100.1AT Laccase/Diphenol oxidase family protein JGI N/AIEA
GO:0046274GO-bp lignin catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0048046GO-cc apoplast EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016722GO-mf oxidoreductase activity, oxidizing metal ions EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0052716GO-mf hydroquinone:oxygen oxidoreductase activity EnsemblGenomesN/AIEA
KOG1263 KOG Multicopper oxidases JGI N/AIEA
PTHR11709Panther MULTI-COPPER OXIDASE JGI N/AIEA
PTHR11709:SF9Panther LACCASE-7-RELATED JGI N/AIEA
PF00394PFAM Multicopper oxidase JGI N/AIEA
PF07731PFAM Multicopper oxidase JGI N/AIEA
PF07732PFAM Multicopper oxidase JGI N/AIEA
GN7V-61493SoyCyc9-rxn laccase Plant Metabolic Network ISS

Proteins Associated with Glyma.20g172700
LocusGene SymbolProtein Name
Lac88 Laccase 88

Expression Patterns of Glyma.20g172700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g172700
ParalogEvidenceComments
Glyma.10g219100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g172700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g31280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g172700
>Glyma.20g172700.1 sequence-type=CDS polypeptide=Glyma.20g172700.1.p locus=Glyma.20g172700 ID=Glyma.20g172700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTTTGGCAAGAAACTGTTCCTCCAAATTCTGTGGTGGTTTTCCTTGATCGGTCTTAGTTCCCAAAGACGGAGTCATTACAGTTTTGTTGTGAGAGAGGCCAATTATACAAGACTCGGTTCAACAAAAAGCATATTGACAGTGAATGGGAATTTTCCAGGACCAACTATCAAAGTCCACAGAGGAGAAACAATCTTTGTTAATGTTTATAACAAGGGCAACTACAATATCACTTTGCACTGGCATGGAGTGAAGCAGCCAAGGAATCCATGGACAGATGGTCCTGCATACATCACTCAGTGCCCCATACAACCTGGAAGGAGATTCAGACAGAAGTTGATTTTTTCTACAGAGGAAGGGACCATATGGTGGCATGCTCATAGTGACTGGTCAAGAGCCACTATTCATGGGGCTATCTTTGTCTATCCAACCAAGAATACACCCTACCCTTTTCCCAAACCTCATGCAGAGATTCCCATCATATTTGGAGAATGGTGGAAGAGTGATATCAATGAGGTGTTCACACAATTTATTGAATCTGGAGGAGGCCCAAATATATCTGATGCTCTCACGATAAATGGTCAACCTGGGGATTTGTACCCTTGCTCAATGGCAGAAACGTTCGAGTTTCATGTAGAGCAAGGCAGGACTTATCTTCTCCGTGTTGTCAATGCGGCAATGAATCTCATTCTCTTCTTCTCTGTTTCAAAACACAACCTCACTGTTGTTGGTGCTGATGGTATGTTAACCAAGCCATTGGCAAGGGAATACATTTGCATATCACCGGGACAAACAATGGATGTGTTATTGCATGCCAACCAAGAACCTAATCATTACTATCTTGCTGCAAGAGCATATTCAAGTGGTGTTGGTGTTGCCTTTGATAACACCACAACCACTGCTAGAGTAAAGTACAGTGGAAACTACACTCCACGTTCATCTCCTTCATTGCCTAACCTTCCCAACTTTAACGACACGCGTGCTGCGTTGGACTTCATTACAAGCTTGAGAGGCTTATCTGAGAGATACCCTCGCCAGGTCCCAACAAACATCACAACTCAAATAGTGACCACTATTTCAGTTAACACTTTGCCATGCCCTAATAATGGCAGAACCTGCCAGGGACCAAATGGAACCATTTTCGCTGCTAGCATGAACAACATAAGTTTTGACACCCCCAACGTTGACATACTAAAAGCCTATTACTACCATATCAACGGGGTTTACAAACCGGGATTTCCAAGATTTCCACCCTTTATATTTAACTTCACTGGGGATTTTTTGCCTGTAACATTGAATATACCAAAGCAAGGGACTAGGGTTAATGTGTTGAATTATGGTGCAACGGTTGAAATTGTTTTCCAAGGGACAAACGTTGTTGCAGGGATAGACCATCCTATGCATCTCCATGGGTTCAGTTTCCATGTTGTAGGATATGGTTTAGGCAATTTTAACCAAAGCAAGGACCCCTTGAATTTCAATCTTGTTGATCCTCCTTATTTGAACACAGTGATTGTCCCTGTAAATGGTTGGGCTGCTATTAGGTTTGTGGCTACCAACCCTGGAGTATGGTTCATGCACTGTCATCTAGAGCGCCACCAAGCTTGGGGCATGGAGACGGTGTTTATTGTGAAGAATGGAAAGGCTTCAAATGAAACATTACCACCACCACCGCCAGATATGCCCTCTTGTTGA
Predicted protein sequences of Glyma.20g172700
>Glyma.20g172700.1.p sequence-type=predicted peptide transcript=Glyma.20g172700.1 locus=Glyma.20g172700 ID=Glyma.20g172700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFGKKLFLQILWWFSLIGLSSQRRSHYSFVVREANYTRLGSTKSILTVNGNFPGPTIKVHRGETIFVNVYNKGNYNITLHWHGVKQPRNPWTDGPAYITQCPIQPGRRFRQKLIFSTEEGTIWWHAHSDWSRATIHGAIFVYPTKNTPYPFPKPHAEIPIIFGEWWKSDINEVFTQFIESGGGPNISDALTINGQPGDLYPCSMAETFEFHVEQGRTYLLRVVNAAMNLILFFSVSKHNLTVVGADGMLTKPLAREYICISPGQTMDVLLHANQEPNHYYLAARAYSSGVGVAFDNTTTTARVKYSGNYTPRSSPSLPNLPNFNDTRAALDFITSLRGLSERYPRQVPTNITTQIVTTISVNTLPCPNNGRTCQGPNGTIFAASMNNISFDTPNVDILKAYYYHINGVYKPGFPRFPPFIFNFTGDFLPVTLNIPKQGTRVNVLNYGATVEIVFQGTNVVAGIDHPMHLHGFSFHVVGYGLGNFNQSKDPLNFNLVDPPYLNTVIVPVNGWAAIRFVATNPGVWFMHCHLERHQAWGMETVFIVKNGKASNETLPPPPPDMPSC*






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