Report for Sequence Feature Glyma.20g172200
| Feature Type: | gene_model |
| Chromosome: | Gm20 |
| Start: | 40956526 |
| stop: | 40963973 |
| Source: | JGI |
| Version: | Wm82.a4.v1 |
| High confidence: | yes |
| 
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Annotations for Glyma.20g172200
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|
| AT1G71800.1 | AT |
CSTF64 |
JGI | N/A | IEA |
| GO:0031124 | GO-bp |
mRNA 3'-end processing |
JGI | N/A | IEA |
| GO:0003676 | GO-mf |
nucleic acid binding |
JGI | N/A | IEA |
| K14407 | KEGG |
Messenger RNA biogenesis |
JGI | N/A | IEA |
| KOG0108 |
KOG |
mRNA cleavage and polyadenylation factor I complex, subunit RNA15 |
JGI | N/A | IEA |
| PTHR23139 | PantherFam |
RNA-BINDING PROTEIN |
JGI | N/A | IEA |
| PF00076 | Pfam |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
JGI | N/A | IEA |
| PF14304 | Pfam |
Transcription termination and cleavage factor C-terminal |
JGI | N/A | IEA |
| PF14327 | Pfam |
Hinge domain of cleavage stimulation factor subunit 2 |
JGI | N/A | IEA |
Gene model name correspondences to Glyma.20g172200 Gene Call Version Wm82.a4.v1
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Glyma20g31220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
Coding sequences of Glyma.20g172200
>Glyma.20g172200.1 sequence-type=CDS polypeptide=Glyma.20g172200.1.p locus=Glyma.20g172200 id=Glyma.20g172200.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATCGAAATCTGCCAAGAGGTTGGCCCAGTAGTCTCATTCAGACTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTACAAGGATGAAGAGACGGCTTTGAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGGGTCGTGGCGGTCCTGGAATGACAACAAATGTTGACCATCAGAAACAAGTTGGTGTCCCAGCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAACAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACAGAGATTATCTCTGAGCTGAAGGGAATGGCTACACAAAACAAAGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCGCAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCTGATCAAACCTCACAGTCTTCAATGAATGAAGGCCAGCTGGGTCAGGCATCATTGGTTCAAACTCTGTCAGGCCTTCCTCATGGGCAGGACAAGTTGCAGCCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGGTTCCTAGTCAATTAACTGCGCATCCAAAGCCTCCAGTGCAGCCTCGGATTCCCCTTCAGCAAAATCCAAACAATCTTGTACTGCCAGGAACATTGTCTGGGCAGTCTAATTTAATGCTTCCTTCTGCACGTTCTCCAGGTTTGGGAAGTTTGTCTGTTAGGCCTCCAATTCAACTGGCAACTTCAACTGCTCTAAACCAGCAAATGCATGCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATGTTCAAAAGGTTCGTCCAGACGCCAACTTTCAGCCTGGCCCCTCCATGTCAACAACTAATTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAACTAATACATATTCAAAATCAAACATTCCTTTGGGAGTAGAGAAAACAAACATGGTTCGTGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTTATGAAATTGGATGAGGGAAGGAGCACCCCTCTTTCTGCAGGGATTTTGGATATGCCTGTCACCGATGGATCATCTCATATCCTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTAAGTTCCTTGCCACCAGATCAGCAACAACAGGTCCTTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATACAGCCCTCATAA
Predicted protein sequences of Glyma.20g172200
>Glyma.20g172200.1.p sequence-type=predicted peptide transcript=Glyma.20g172200.1 locus=Glyma.20g172200 id=Glyma.20g172200.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDHQKQVGVPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSSMNEGQLGQASLVQTLSGLPHGQDKLQPGLTPYAQEGQVNTIPHNPLVPSQLTAHPKPPVQPRIPLQQNPNNLVLPGTLSGQSNLMLPSARSPGLGSLSVRPPIQLATSTALNQQMHASLLQHSVHVGNSTVGHNVQKVRPDANFQPGPSMSTTNSQLLSKGDKSSKVIEDLNWAKRTNTYSKSNIPLGVEKTNMVRDSSESFTRPSKVMKLDEGRSTPLSAGILDMPVTDGSSHILGRSSLPVHAAPKAEGQYSEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPDQQQQVLQLQQALRRDQIQPS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
