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Report for Sequence Feature Glyma.20g167800

Feature Type:gene_model
Chromosome:Gm20
Start:40563725
stop:40566841
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g167800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G43580.1AT Sphingomyelin synthetase family protein JGI N/AIEA
GO:0046513GO-bp ceramide biosynthetic process EnsemblGenomesN/AIEA
GO:0005887GO-cc integral component of plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0030173GO-cc integral component of Golgi membrane EnsemblGenomesN/AIEA
GO:0030176GO-cc integral component of endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0033188GO-mf sphingomyelin synthase activity EnsemblGenomesN/AIEA
GO:0047493GO-mf ceramide cholinephosphotransferase activity EnsemblGenomesN/AIEA
KOG3058 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR21290Panther SPHINGOMYELIN SYNTHETASE JGI N/AIEA
PTHR21290:SF13Panther JGI N/AIEA
GN7V-66271SoyCyc9-rxn sphingomyelin synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.20g167800
LocusGene SymbolProtein Name
PLM putative sphingomyelin synthase family protein

Expression Patterns of Glyma.20g167800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g167800 not represented in the dataset
Glyma.20g167800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g167800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g30750 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g167800
>Glyma.20g167800.1 sequence-type=CDS polypeptide=Glyma.20g167800.1.p locus=Glyma.20g167800 ID=Glyma.20g167800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGTGGCCGGCGCCGCCGGCGAACGCCGGGCTGGGCATAGCCGCCATGTCCTATATCACCGTCGACTACCTCCGCCACCTTTCCCCGGCGTGGCACTCGCGTCTGCAACCGGCGCTGTGGTCCCTCCTCGCCCTCACCGCCGTTTTCCGCGTCCCCTCCTACCGGCACTGGTCTGCCGAGTTCCGGTCGGCGATTCCGTTCATCGCCTCCATGCTCTTCATGCTCGCCGCCCTCCTCTGCGAAATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCTGAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAATGAGAAACTTCCTACTCCAATTGTTGAGATACTAAGAGCTCGAATCATTGGACTGCACCATTTCTTGATGTTGTTTATGATGCTGGCTTTCTCTGTGCTATTTGATTCTGTTAAAGCTCCGGGCCTCGGATTAGGTGCTAGGTACATGTTTACCATGGCAGTTGGCCGCCTTCTTCGTGCCATAACTTTTGCATCTACAATTCTGCCATCTGCCCGTCCTTGGTGTGCTGGTTCCCGGTTCAGAGTTCCGGGATATCCTCATCGTTGGGCTCAGAAATATTATGTTCCCTATGCTACAGATCATGATGCTATCAGCCGGGTGATAAAGCTCGATACAGCTTACGTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGAGCTTTCTAATTGATTTTCTGCGACCCACTGTCTCCGAAGGACCTTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCACAGTGCCCAAAGAGAAATACGAGAACGCCATCATTACACTGTAGACTGCGTTGTAGCCATCTATGTGGGGATCCTCTTATGGAAGATGACAGGTTTTATCTGGTCACATGAAGCTACATCTAGTAATAGGAGGCTGACTAAATTTGAGAAGATTCAAAGCAGACTAATCCAAGCTTCCAAAGACTCGGACATTGATGAAGTGAGGGAGCTTCTCAAAGAGATTGAGTTAAGCAATGAAGAGAGCAAGAATCAGACTGGAATTAAATATTCACGGTTGTTTCGTAGTGCCACCATTGTCTTTGCACTTGTCATTGTTGTTCTGGCTTTCACACTGACAAGTGATGGATGA
Predicted protein sequences of Glyma.20g167800
>Glyma.20g167800.1.p sequence-type=predicted peptide transcript=Glyma.20g167800.1 locus=Glyma.20g167800 ID=Glyma.20g167800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRWPAPPANAGLGIAAMSYITVDYLRHLSPAWHSRLQPALWSLLALTAVFRVPSYRHWSAEFRSAIPFIASMLFMLAALLCEMISVRSVTAVLGLDWHLNTPPLPDTGQWLLLALNEKLPTPIVEILRARIIGLHHFLMLFMMLAFSVLFDSVKAPGLGLGARYMFTMAVGRLLRAITFASTILPSARPWCAGSRFRVPGYPHRWAQKYYVPYATDHDAISRVIKLDTAYVDIGKPVGDYQPDWGSMSFLIDFLRPTVSEGPSWYSLLKKAGGGCNDLLYSGHMLVAVLTAMAWTEAYGGFSSALVWLLVMHSAQREIRERHHYTVDCVVAIYVGILLWKMTGFIWSHEATSSNRRLTKFEKIQSRLIQASKDSDIDEVRELLKEIELSNEESKNQTGIKYSRLFRSATIVFALVIVVLAFTLTSDG*






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