SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48990.1 | AT | AMP-dependent synthetase and ligase family protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| KOG1176 | KOG | Acyl-CoA synthetase | JGI | N/A | IEA |
| PTHR24095 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24095:SF49 | Panther | JGI | N/A | IEA | |
| PF00501 | PFAM | AMP-binding enzyme | JGI | N/A | IEA |
| GN7V-60568 | SoyCyc9-rxn | oxalate-CoA ligase | Plant Metabolic Network | ISS |
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Glyma.20g159300 not represented in the dataset |
Glyma.20g159300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g29850 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g159300.1 sequence-type=CDS polypeptide=Glyma.20g159300.1.p locus=Glyma.20g159300 ID=Glyma.20g159300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTCTCACGTTTCCAATGCCGATCACAACAAATCACAATGCAGCAAGCTCCAACCACACTCACCGGATTGCTCCATCGCGTCGCCGGAATATTCCCCTCCCGCCGCGCCGTCTCCGTCTCCGGCAAGTTCGACCTCACGCACTCCCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGCGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTATAATAACGTTCTTGGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCATTGAACGCGGCTTACACCCGCCGAGGAGTTCGAGTTTTTATCTATCTGACTCAGATTCAAAGCTGTTACTAACCTCAAAAGAAGGAAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAACATTCCGCACGCAACGGCATGGCTCGCGGAAGCCGAGGAGCTGAGTCTCTCTCTGAGTTCCACCGAGTCAGCAATCGACTCGGTCTCCGAAATCGCCAACGACGCTTCCGACGTGGCACTGTTCCTTCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAATTTGGCCTCTTCCGTGGAGAACATCAAGTCCGTGTACAGACTCACTGAGTCTGACTCGACCGTGATCGTTCTCCCGTTGTTCCACGTGCACGGCCTGCTCGCGGCGCTGCTCAGTTCGCTAGCCGCCGGAGCCGCCGTGGTTCTTCCGGAGGCGGGGAGGTTCTCCGCCTCCACGTTCTGGAGCGACATGGCGAGGTACGACGCCACGTGGTACACCGCGGTTCCCACCGTGCACCAGATCGTGCTGGAGCGTCACTTAAAAAACGCGGAACCGGTTTACCCGAAGCTCCGGTTTATCCGGAGCTGTAGCGCGTCGCTTGCACCGGCAATATTGGAACGGTTGGAGGAGGCGTTCGGTGCACCGGTTTTGGAGGCGTATGCGATGACGGAAGCCTCGCATTTGATGTCGTCGAATCCGTTGCCCGAAGATGGGCCTCACCGAGCCGGGTCGGTTGGAAAGCCCGTGGGCCAGGAAATGGTGATATTAAACGAGAATGGTGAGATTCAAAAGAATGAGGTGAAAGGTGAGGTTTGTATTAGAGGACCTAACGTGACCAAAGGGTATAAAAACAACCCTGATGCGAATGATTCTGCGTTTCAATTCGGGTGGTTCCACACTGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCACCTTGTTGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTTGATGCTGTCCTTCTATCTCATCCAGACATTGCTCAGGCAGTTGCATTCGGAGTACCAGATGACAAATATGGCGAAGAGATAAATTGTGCAATCATCCCAAAAGAAGGATCAAACATTGATGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAACCTTGCAGCCTTCAAAGTCCCTAAAAAGGTCTTCTTCACTGATTCTTTGCCCAAGACTGCAACTGGCAAGATTCTAAGGCGTCTTGTAGCAGAACACTTTGTTTCTCAAACTTGA
>Glyma.20g159300.1.p sequence-type=predicted peptide transcript=Glyma.20g159300.1 locus=Glyma.20g159300 ID=Glyma.20g159300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLSRFQCRSQQITMQQAPTTLTGLLHRVAGIFPSRRAVSVSGKFDLTHSRLHHLVELAASRLLSAGIKPGDVVALTFPNTVEFIITFLGRYSSASHGGAIERGLHPPRSSSFYLSDSDSKLLLTSKEGNEPAQAAASKLNIPHATAWLAEAEELSLSLSSTESAIDSVSEIANDASDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLLAALLSSLAAGAAVVLPEAGRFSASTFWSDMARYDATWYTAVPTVHQIVLERHLKNAEPVYPKLRFIRSCSASLAPAILERLEEAFGAPVLEAYAMTEASHLMSSNPLPEDGPHRAGSVGKPVGQEMVILNENGEIQKNEVKGEVCIRGPNVTKGYKNNPDANDSAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVQRFSKKNLAAFKVPKKVFFTDSLPKTATGKILRRLVAEHFVSQT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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