SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g153600

Feature Type:gene_model
Chromosome:Gm20
Start:39249126
stop:39260117
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g153600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51820.1AT phosphoglucomutase JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0005978GO-bp glycogen biosynthetic process EnsemblGenomesN/AIEA
GO:0006006GO-bp glucose metabolic process EnsemblGenomesN/AIEA
GO:0009590GO-bp detection of gravity EnsemblGenomesN/AIEA
GO:0019252GO-bp starch biosynthetic process EnsemblGenomesN/AIEA
GO:0019388GO-bp galactose catabolic process EnsemblGenomesN/AIEA
GO:0071704GO-bp organic substance metabolic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0010319GO-cc stromule EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0004614GO-mf phosphoglucomutase activity EnsemblGenomesN/AIEA
GO:0016868GO-mf intramolecular transferase activity, phosphotransferases EnsemblGenomesN/AIEA
GO:0016868GO-mf intramolecular transferase activity, phosphotransferases JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0625 KOG Phosphoglucomutase JGI N/AIEA
PTHR22573Panther PHOSPHOHEXOMUTASE FAMILY MEMBER JGI N/AIEA
PTHR22573:SF5Panther JGI N/AIEA
PF00408PFAM Phosphoglucomutase/phosphomannomutase, C-terminal domain JGI N/AIEA
PF02878PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JGI N/AIEA
PF02879PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JGI N/AIEA
PF02880PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JGI N/AIEA
GLUCOSE1PMETAB-PWYSoyCyc9 glucose and glucose-1-phosphate degradation Plant Metabolic Network ISS
PWY-3801SoyCyc9 sucrose degradation II (sucrose synthase) Plant Metabolic Network ISS
PWY-5661SoyCyc9 GDP-glucose biosynthesis Plant Metabolic Network ISS
PWY-622SoyCyc9 starch biosynthesis Plant Metabolic Network ISS
PWY-6317SoyCyc9 D-galactose degradation I (Leloir pathway) Plant Metabolic Network ISS
PWY-7238SoyCyc9 sucrose biosynthesis II Plant Metabolic Network ISS
PWY-7343SoyCyc9 UDP-α-D-glucose biosynthesis I Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
PWYQT-4466SoyCyc9 superpathway of sucrose and starch metabolism I (non-photosynthetic tissue) Plant Metabolic Network ISS
SUCSYN-PWYSoyCyc9 sucrose biosynthesis I (from photosynthesis) Plant Metabolic Network ISS
GN7V-55679SoyCyc9-rxn phosphoglucomutase (glucose-cofactor) Plant Metabolic Network ISS

Proteins Associated with Glyma.20g153600
LocusGene SymbolProtein Name
PGM4 Phosphoglucomutase 4 gene

Expression Patterns of Glyma.20g153600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g153600
ParalogEvidenceComments
Glyma.10g241000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g153600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g29230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g153600
>Glyma.20g153600.2 sequence-type=transcript locus=Glyma.20g153600 ID=Glyma.20g153600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTTAACAGTTGACATTCACATGTTGTTGAATCTCATCTCAGGATAAGTGTCCCTTCGTACATGTGGCATTGTGTGTTCCCACAACTGCTCCAATCACAAACACAATTAAGAGAGACTCATAACTCGTTGATATAAATCATCACAGAGCATCATCAGTGTCTCTTTTGCTCTCTCTCTCTCTTACAAAAGAGTGATAGATAGAATACAACATTTCATTTCTCATCGATGGCTTTCTCTTGTAAACTTGACTGCTTCATTCTCCCTGCCTATAAACCCCAAAACTCCATTCTCCCACTTTCAATCCAACCTTCCTCCTTCCTCCCATCTCCTTCTTCCTTCAAGCCTCAAAAGCTTCCCTTCGGAATCCGCTATGGTTCTACCATCAGAGTCACTTCATCATCCTCAACCCCTTCCACAACCATTGCCGAACCTGAAGGCATTAAGATTAAATCGATTCCAACCAAGCCCATCGAGGGACAAAAGACTGGAACCAGTGGGCTTCGAAAGAAGGTGAAAGTGTTTATGCAAGACAATTACCTCGCAAATTGGATCCAGGCCCTGTTTAATTCATTGCCTCCCGAGGATTACAAGAATGGCTTGTTGGTGTTGGGAGGTGATGGGCGATACTTTAATCGGGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTAGTTGGACAGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTAATAAGAAAGAGAAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGATCTCTGTGATAAAGATAGCTGACATTCTTGATGTTGACATATCAAAAGTTGGGGTTACAAAGTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTCTCTGACTATCTGGAGCTATTGGAGACAGTATTCGATTTTCAGCTAATCAAAGGTCTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAACATACGCAAAGGATCTTGTCAACATTCTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCGGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCGGTTCCATACTTCAAGAATGGTGTTAAGGGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCGGTTTGCGGGGAAGAAAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGATGGCATTTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGCAACAAAGACAAGAAGCCAGGGGAGAAATTGATCTCTGTATCTGACATCGTGACAGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCCAATAAGATGATAGAACACCTACGAGATATTGTGTCTAAGAGCAAGCCTGGTGATCAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTGCATACACTGATCCTAGTGCAGGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGATGGTTCAAGGATTATATATCGTTTATCAGGTACTGGTTCTGCAGGGGCAACTGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAATGGACAATTCCACAACCACTTGATCAAGTTGTCCTATGTACCAAGGTGTGCTCTAAGTTGAGTGCATACGCAGGTTGTTTGTTACATGCCTTTCCATATCAAAGCTCGCTCGAGTTCAGTCACTTTTGGTTGTTCAAGAATTTTGGAGCGATAGGTCCCTTGTAAGATATGGTACTTAAATATTTATGTGTAAAATATGAAGCACCGTTGTGCaacaaaataaaataaaactaaaaagaaataaaTAGTTTGCTGCTCTAAGGAGCTAAGCTTTTCAAAGTTTTGTCCAATTTCTAAGTTGAGAAACAGGAGTTACGTCTCATCAAGCAGAATACCAATTTCACGTGTGTTCTAAACTTCCTTCTCTGTTATAATTAGTAGACCTCTTTAATTCCTGATGTCTCTAGTATGCCAAAAGTATGAATGTTATTGTCAAGAATCTATTTTTTAGCACTTGA
Coding sequences of Glyma.20g153600
>Glyma.20g153600.1 sequence-type=CDS polypeptide=Glyma.20g153600.1.p locus=Glyma.20g153600 ID=Glyma.20g153600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTCTTGTAAACTTGACTGCTTCATTCTCCCTGCCTATAAACCCCAAAACTCCATTCTCCCACTTTCAATCCAACCTTCCTCCTTCCTCCCATCTCCTTCTTCCTTCAAGCCTCAAAAGCTTCCCTTCGGAATCCGCTATGGTTCTACCATCAGAGTCACTTCATCATCCTCAACCCCTTCCACAACCATTGCCGAACCTGAAGGCATTAAGATTAAATCGATTCCAACCAAGCCCATCGAGGGACAAAAGACTGGAACCAGTGGGCTTCGAAAGAAGGTGAAAGTGTTTATGCAAGACAATTACCTCGCAAATTGGATCCAGGCCCTGTTTAATTCATTGCCTCCCGAGGATTACAAGAATGGCTTGTTGGTGTTGGGAGGTGATGGGCGATACTTTAATCGGGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTAGTTGGACAGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTAATAAGAAAGAGAAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGATCTCTGTGATAAAGATAGCTGACATTCTTGATGTTGACATATCAAAAGTTGGGGTTACAAAGTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTCTCTGACTATCTGGAGCTATTGGAGACAGTATTCGATTTTCAGCTAATCAAAGGTCTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAACATACGCAAAGGATCTTGTCAACATTCTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCGGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCGGTTCCATACTTCAAGAATGGTGTTAAGGGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCGGTTTGCGGGGAAGAAAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGATGGCATTTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGCAACAAAGACAAGAAGCCAGGGGAGAAATTGATCTCTGTATCTGACATCGTGACAGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCCAATAAGATGATAGAACACCTACGAGATATTGTGTCTAAGAGCAAGCCTGGTGATCAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTGCATACACTGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGATGGTTCAAGGATTATATATCGTTTATCAGGTACTGGTTCTGCAGGGGCAACTGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAA

>Glyma.20g153600.2 sequence-type=CDS polypeptide=Glyma.20g153600.2.p locus=Glyma.20g153600 ID=Glyma.20g153600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTCTTGTAAACTTGACTGCTTCATTCTCCCTGCCTATAAACCCCAAAACTCCATTCTCCCACTTTCAATCCAACCTTCCTCCTTCCTCCCATCTCCTTCTTCCTTCAAGCCTCAAAAGCTTCCCTTCGGAATCCGCTATGGTTCTACCATCAGAGTCACTTCATCATCCTCAACCCCTTCCACAACCATTGCCGAACCTGAAGGCATTAAGATTAAATCGATTCCAACCAAGCCCATCGAGGGACAAAAGACTGGAACCAGTGGGCTTCGAAAGAAGGTGAAAGTGTTTATGCAAGACAATTACCTCGCAAATTGGATCCAGGCCCTGTTTAATTCATTGCCTCCCGAGGATTACAAGAATGGCTTGTTGGTGTTGGGAGGTGATGGGCGATACTTTAATCGGGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTAGTTGGACAGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTAATAAGAAAGAGAAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGATCTCTGTGATAAAGATAGCTGACATTCTTGATGTTGACATATCAAAAGTTGGGGTTACAAAGTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTCTCTGACTATCTGGAGCTATTGGAGACAGTATTCGATTTTCAGCTAATCAAAGGTCTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAACATACGCAAAGGATCTTGTCAACATTCTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCGGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCGGTTCCATACTTCAAGAATGGTGTTAAGGGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCGGTTTGCGGGGAAGAAAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGATGGCATTTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGCAACAAAGACAAGAAGCCAGGGGAGAAATTGATCTCTGTATCTGACATCGTGACAGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCCAATAAGATGATAGAACACCTACGAGATATTGTGTCTAAGAGCAAGCCTGGTGATCAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTGCATACACTGATCCTAGTGCAGGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGATGGTTCAAGGATTATATATCGTTTATCAGGTACTGGTTCTGCAGGGGCAACTGTTAG
Predicted protein sequences of Glyma.20g153600
>Glyma.20g153600.1.p sequence-type=predicted peptide transcript=Glyma.20g153600.1 locus=Glyma.20g153600 ID=Glyma.20g153600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSCKLDCFILPAYKPQNSILPLSIQPSSFLPSPSSFKPQKLPFGIRYGSTIRVTSSSSTPSTTIAEPEGIKIKSIPTKPIEGQKTGTSGLRKKVKVFMQDNYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGQEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISVIKIADILDVDISKVGVTKFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPILVDKLGASLDSISNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANAREAVPYFKNGVKGLARSMPTSGALDRVAEKLDLPFFEVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPGEKLISVSDIVTEHWATYGRNFFSRYDYEECESEGANKMIEHLRDIVSKSKPGDQYGSYVLQFADDFAYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLAISMSKLKDFTGREKPTVIT*

>Glyma.20g153600.2.p sequence-type=predicted peptide transcript=Glyma.20g153600.2 locus=Glyma.20g153600 ID=Glyma.20g153600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFSCKLDCFILPAYKPQNSILPLSIQPSSFLPSPSSFKPQKLPFGIRYGSTIRVTSSSSTPSTTIAEPEGIKIKSIPTKPIEGQKTGTSGLRKKVKVFMQDNYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGQEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISVIKIADILDVDISKVGVTKFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPILVDKLGASLDSISNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANAREAVPYFKNGVKGLARSMPTSGALDRVAEKLDLPFFEVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPGEKLISVSDIVTEHWATYGRNFFSRYDYEECESEGANKMIEHLRDIVSKSKPGDQYGSYVLQFADDFAYTDPSAGRWKCGIKTRCSVCFYRWFKDYISFIRYWFCRGNC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo