Glyma.20g144800

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Report for Sequence Feature Glyma.20g144800

Feature Type:	gene_model
Chromosome:	Gm20
Start:	38334461
stop:	38336510
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g144800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32150.1	AT	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
KOG3109	KOG	Haloacid dehalogenase-like hydrolase	JGI	N/A	IEA
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI	N/A	IEA
PTHR12725:SF15	Panther		JGI	N/A	IEA
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI	N/A	IEA
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI	N/A	IEA
PWY-7204	SoyCyc9	pyridoxal 5'-phosphate salvage II (plants)	Plant Metabolic Network		ISS
GN7V-65714	SoyCyc9-rxn	pyridoxal phosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.20g144800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g144800 not represented in the dataset	Glyma.20g144800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g144800

Paralog	Evidence	Comments
Glyma.10g248900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g144800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g28320	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g144800

Limit To All Plant Sequences

>Glyma.20g144800.2 sequence-type=transcript locus=Glyma.20g144800 ID=Glyma.20g144800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTCTCTATAAATTCCCCTCCAATCCCTTCATTCGAAGCTCGCTTCCTCTTTCTAACTTGCCATACCATCTTACTTTTACTTTGTTTTCACAACATAGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGAAAAGTGTTTGGATGTGGAGGAGGATAAGGCCTGACGTTGTACAATGTACATTCCCAAACCAACCCAACTATCTAAGCAATTAAAATAATAGCAGCAAGTACTATCAGAACACCAACAACCAAGACAATAACAATAAGTAACATGGGCCCCTAAGCAATTATTTGCGACATCATGTTAATCATGTCAATATTGTAAGATATTTAGTAGTATTATTTGTACGTATTATCAATCGTCTTACAAATAAAATCAAATTGTCTCTCAGAGATATCAATTGCTTAACAATTAATAAAGTTGAGTTACTGTCATTATTTTGATTA

>Glyma.20g144800.3 sequence-type=transcript locus=Glyma.20g144800 ID=Glyma.20g144800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTCTCTATAAATTCCCCTCCAATCCCTTCATTCGAAGCTCGCTTCCTCTTTCTAACTTGCCATACCATCTTACTTTTACTTTGTTTTCACAACATAGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTAATTTCCTAGACGACCTAATAATTATTATTTAAGTTGGTTTAGTTAGCATAATATTCAATATTATCATGAGTGGTTTCTTTGGGATTGTTATAGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGAAAAGTGTTTGGATGTGGAGGAGGATAAGGCCTGACGTTGTACAATGTACATTCCCAAACCAACCCAACTATCTAAGCAATTAAAATAATAGCAGCAAGTACTATCAGAACACCAACAACCAAGACAATAACAATAAGTAACATGGGCCCCTAAGCAATTATTTGCGACATCATGTTAATCATGTCAATATTGTAAGATATTTAGTAGTATTATTTGTACGTATTATCAATCGTCTTACAAATAAAATCAAATTGTCTCTCAGAGATATCAATTGCTTAACAATTAATAAAGTTGAGTTACTGTCATTATTTTGATTA

>Glyma.20g144800.4 sequence-type=transcript locus=Glyma.20g144800 ID=Glyma.20g144800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTCTCTATAAATTCCCCTCCAATCCCTTCATTCGAAGCTCGCTTCCTCTTTCTAACTTGCCATACCATCTTACTTTTACTTTGTTTTCACAACATAGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGGTAAGACAAGACGACCAAGTCAACAACCTCAACCTATACGGCCATTGATTTGAATGAAACTAAACTTCATCCAAGAAAAAATACACTCAAATCTAAGTGTGTTAGATAAAACTTTGAATTCAAATTATATAAATAGAAAAAACGTGATT

Coding sequences of Glyma.20g144800

Limit To All Plant Sequences

>Glyma.20g144800.1 sequence-type=CDS polypeptide=Glyma.20g144800.1.p locus=Glyma.20g144800 ID=Glyma.20g144800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGTCAGTAATAATAACACATCAATCAATGTCTTATTACAAGCTCTAACACACCAATATCCCCATCTCAACTCTGTTTCCTTCTTCGTTACTTTGCAGGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGA

>Glyma.20g144800.2 sequence-type=CDS polypeptide=Glyma.20g144800.2.p locus=Glyma.20g144800 ID=Glyma.20g144800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGA

>Glyma.20g144800.3 sequence-type=CDS polypeptide=Glyma.20g144800.3.p locus=Glyma.20g144800 ID=Glyma.20g144800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTAATTTCCTAG

>Glyma.20g144800.4 sequence-type=CDS polypeptide=Glyma.20g144800.4.p locus=Glyma.20g144800 ID=Glyma.20g144800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGGTAAGACAAGACGACCAAGTCAACAACCTCAACCTATACGGCCATTGA

Predicted protein sequences of Glyma.20g144800

Limit To All Plant Sequences

>Glyma.20g144800.1.p sequence-type=predicted peptide transcript=Glyma.20g144800.1 locus=Glyma.20g144800 ID=Glyma.20g144800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRVSNNNTSINVLLQALTHQYPHLNSVSFFVTLQALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTLFLDDSVRNIAAGKEMGLHTVLVGKTEKSKGADYAVECVNDLAQVIPEIWANEMDGEDQTMTRTKSELEAVLACAVVGA*

>Glyma.20g144800.2.p sequence-type=predicted peptide transcript=Glyma.20g144800.2 locus=Glyma.20g144800 ID=Glyma.20g144800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTLFLDDSVRNIAAGKEMGLHTVLVGKTEKSKGADYAVECVNDLAQVIPEIWANEMDGEDQTMTRTKSELEAVLACAVVGA*

>Glyma.20g144800.3.p sequence-type=predicted peptide transcript=Glyma.20g144800.3 locus=Glyma.20g144800 ID=Glyma.20g144800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTLFLDDSVRNIAAGKEMGLHTVLVIS*

>Glyma.20g144800.4.p sequence-type=predicted peptide transcript=Glyma.20g144800.4 locus=Glyma.20g144800 ID=Glyma.20g144800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTVRQDDQVNNLNLYGH*

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