Glyma.20g126000

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Report for Sequence Feature Glyma.20g126000

Feature Type:	gene_model
Chromosome:	Gm20
Start:	36808696
stop:	36812985
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g126000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14650.1	AT	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	JGI	N/A	IEA
GO:0000381	GO-bp	regulation of alternative mRNA splicing, via spliceosome	EnsemblGenomes	N/A	IEA
GO:0000389	GO-bp	mRNA 3'-splice site recognition	EnsemblGenomes	N/A	IEA
GO:0006396	GO-bp	RNA processing	EnsemblGenomes	N/A	IEA
GO:0006396	GO-bp	RNA processing	JGI	N/A	IEA
GO:0005686	GO-cc	U2 snRNP	EnsemblGenomes	N/A	IEA
GO:0071004	GO-cc	U2-type prespliceosome	EnsemblGenomes	N/A	IEA
GO:0071013	GO-cc	catalytic step 2 spliceosome	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG0007	KOG	Splicing factor 3a, subunit 1	JGI	N/A	IEA
PTHR15316	Panther	SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED	JGI	N/A	IEA
PF00240	PFAM	Ubiquitin family	JGI	N/A	IEA
PF01805	PFAM	Surp module	JGI	N/A	IEA
PF12230	PFAM	Pre-mRNA splicing factor PRP21 like protein	JGI	N/A	IEA

Expression Patterns of Glyma.20g126000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g126000 not represented in the dataset	Glyma.20g126000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g126000

Paralog	Evidence	Comments
Glyma.10g264400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g126000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g26200	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g126000

Limit To All Plant Sequences

>Glyma.20g126000.2 sequence-type=transcript locus=Glyma.20g126000 ID=Glyma.20g126000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gcttcttcttccacattattttcgtgctcttgcgcttcccttcttcttcttTCCCCCCTTTTTTTCTCTTTGTAGCGCCGCTACCTATACTTTGTTTATTGGCTCCATGTTCTTCTTCCCTCACTGATTTATCTTTTGTCAGATTCGATTTGTTTCATTTGGTTTGCAGAAGAATCTGGGGCAAGAAGCTGGTGTGGTGTTTCTTTCATTTCACTTTATATGAGTACATAGAAGTTTGAAGGGTTTTAGGGATTTGCATCATGTTAGGCTCATTACCTATATTGCCACTCCCTGCTCCTCCCTCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTGATTGAGGAGGAGCAGAACAAATCAAATTCTGCTTCTGTTCCGGCGCCGGCAACAGTTGTCACTCACACCAGAACGATTGGAATTATACATCCGCCTCCGGATATTAGGACCATTGTTGATAAAACCTCCCAGTTCGTGGCTAAGAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGAAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCTTATCATGCATATTATCAACACCGTTTGTCTGAATTTCGTGCTCAGAATCAGTCTTCAGGGCAGCAACCTCCTCCCCAGCCTGCAGACTCGGCTGTTCCTGAATCGGCCCCAGATAGCAACAACGGCGTAGCAGCAGCAGAAAAGCCCGATGTTTCTGCCCAGTTTAAACCTGTCAGGAAAGTACTTGACCCCCCTGAAGCTGAACAGTATACAGTTCGTCTTCCTGAAGGAATCACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAATTTGTGGCTCGTAATGGGAAATCTTTTTTGACAGGGTTGACAAGTAGGGAAGTTAATAATCCCCAGTTCCATTTTCTTAAACCGACCCACAGCATGTTTACGTTTTTCACTTCCCTTGCCGATGCATATTCAAAGGTTTTGATGCCACCGAAGGGTTTGACGGAGAAGCTAAAGAAGAGCGTCTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAGTGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTCGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGGTGACAGCCATGGAAGAAGACATTGTTGAGCCAggaaaggaggtcgaaatggaaatggatgtggaaGAGGCCCAGCTTGTTGAGGAGGGTATGAGAGCTGCTAGTTTGGAAGACCGTGATGATGGAAAGCAGAATGAAGTCAGGGTTACCGAAGACCCTGAACCACCGATGAGAATTGTTAAGAACTGGAAGAGACCAGAGGAGAGGATTTCTGCAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCCATCACTGGTGAGTTAATTCCTATTAGCGAAATGTCAGAACATATGCGGATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAGACAACTCTGGCTGCGGATGATGAAATTTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTCGGTACTACAGAAGAAGAGGTCTCCAATGCTGTCAAAGCAGAGATTGAGAAGATAAATGATGAGCAACCAAAGCAGGTTATATGGGATGGCCACACTGGTAGTATTGGGCGTACTGCAAACCAAGCCATGTCACAAAATATTGGAAGCGAGGATCAAAATGATGCTTCTAACAATGAAGCCAAGAACCTTCTGGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCTCTGCCACTACCACCCGGACTGGCATTGAATCTTCCTCGTGTTCCTGTCCAATATTCTGCTCCTCATAGTGGTGCCCTTCCAATGCCTCCACCTAGATCCATGATGCCATCTATTCGGCCTGCTCTTCCTCCTCCAATGCCAATGAATACTGGACAGCAGTCAATTATAGCTGGCCAACCACCCCCAATGCATCCATCAATTCCTATGAATAACCATGGAATTCCCATACCCCCACCACCAGGATCTCAGTTCACTCCTGTTCCAGTTCCGCGACCTTATGTTCCTCTTTCTGTTCCACCATCAGTTATGCCTATGATGCATCCACCACCTTTGCCTCAAGGATTGCCACCGCCACCGCCACCAGAGGAGGCTCCTCCTCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAACTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAACATCCTGGCCCTGTCCGCATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTTAAGGGACAAGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACTGTTGGTAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCTGGCTTTCTCAAGGATAATATGTCACTTGCCCATTACAATGTTGGTGGAGGTGAAACACTTACCCTCACCTTAAGAGAACGTGGTGGTAGAAAGAGATGAGCATATTGCTTGTATTTCCGTTCAAGAAGGTTGTTGTAATCTTCAGCTTATTACAGGGCATATGGATTCTTATAGTATTGATAGACTGCATTATGTTATTTCCTGAATTTTATGCTGAATACATAAGATTTATTGTACTGTGAGACATCTTGACGTATTTACTGCTGTCATGAAGACTGATGTTAATTCTCG

Coding sequences of Glyma.20g126000

Limit To All Plant Sequences

>Glyma.20g126000.1 sequence-type=CDS polypeptide=Glyma.20g126000.1.p locus=Glyma.20g126000 ID=Glyma.20g126000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGGCTCATTACCTATATTGCCACTCCCTGCTCCTCCCTCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTGATTGAGGAGGAGCAGAACAAATCAAATTCTGCTTCTGTTCCGGCGCCGGCAACAGTTGTCACTCACACCAGAACGATTGGAATTATACATCCGCCTCCGGATATTAGGACCATTGTTGATAAAACCTCCCAGTTCGTGGCTAAGAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGAAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCTTATCATGCATATTATCAACACCGTTTGTCTGAATTTCGTGCTCAGAATCAGTCTTCAGGGCAGCAACCTCCTCCCCAGCCTGCAGACTCGGCTGTTCCTGAATCGGCCCCAGATAGCAACAACGGCGTAGCAGCAGCAGAAAAGCCCGATGTTTCTGCCCAGTTTAAACCTGTCAGGAAAGTACTTGACCCCCCTGAAGCTGAACAGTATACAGTTCGTCTTCCTGAAGGAATCACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAATTTGTGGCTCGTAATGGGAAATCTTTTTTGACAGGGTTGACAAGTAGGGAAGTTAATAATCCCCAGTTCCATTTTCTTAAACCGACCCACAGCATGTTTACGTTTTTCACTTCCCTTGCCGATGCATATTCAAAGGTTTTGATGCCACCGAAGGGTTTGACGGAGAAGCTAAAGAAGAGCGTCTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAGTGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTCGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGGTGACAGCCATGGAAGAAGACATTGTTGAGCCAGGAAAGGAGGTCGAAATGGAAATGGATGTGGAAGAGGCCCAGCTTGTTGAGGAGGGTATGAGAGCTGCTAGTTTGGAAGACCGTGATGATGGAAAGCAGAATGAAGTCAGGGTTACCGAAGACCCTGAACCACCGATGAGAATTGTTAAGAACTGGAAGAGACCAGAGGAGAGGATTTCTGCAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCCATCACTGGTGAGTTAATTCCTATTAGCGAAATGTCAGAACATATGCGGATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAGACAACTCTGGCTGCGGATGATGAAATTTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTCGGTACTACAGAAGAAGAGGTCTCCAATGCTGTCAAAGCAGAGATTGAGAAGATAAATGATGAGCAACCAAAGCAGGTTATATGGGATGGCCACACTGGTAGTATTGGGCGTACTGCAAACCAAGCCATGTCACAAAATATTGGAAGCGAGGATCAAAATGATGCTTCTAACAATGAAGCCAAGAACCTTCTGGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCTCTGCCACTACCACCCGGACTGGCATTGAATCTTCCTCGTGTTCCTGTCCAATATTCTGCTCCTCATAGTGGTGCCCTTCCAATGCCTCCACCTAGATCCATGATGCCATCTATTCGGCCTGCTCTTCCTCCTCCAATGCCAATGAATACTGGACAGCAGTCAATTATAGCTGGCCAACCACCCCCAATGCATCCATCAATTCCTATGAATAACCATGGAATTCCCATACCCCCACCACCAGGATCTCAGTTCACTCCTGTTCCAGTTCCGCGACCTTATGTTCCTCTTTCTGTTCCACCATCAGTTATGCCTATGATGCATCCACCACCTTTGCCTCAAGGATTGCCACCGCCACCGCCACCAGAGGAGGCTCCTCCTCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAACTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAACATCCTGGCCCTGTCCGCATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTTAAGGGACAAGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACTGTTGGTAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCTGGCTTTCTCAAGGATAATATGTCACTTGCCCATTACAATGTTGGTGGAGGTGAAACACTTACCCTCACCTTAAGAGAACGTGGTGGTAGAAAGAGATGA

>Glyma.20g126000.2 sequence-type=CDS polypeptide=Glyma.20g126000.2.p locus=Glyma.20g126000 ID=Glyma.20g126000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGGCTCATTACCTATATTGCCACTCCCTGCTCCTCCCTCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTGATTGAGGAGGAGCAGAACAAATCAAATTCTGCTTCTGTTCCGGCGCCGGCAACAGTTGTCACTCACACCAGAACGATTGGAATTATACATCCGCCTCCGGATATTAGGACCATTGTTGATAAAACCTCCCAGTTCGTGGCTAAGAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGAAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCTTATCATGCATATTATCAACACCGTTTGTCTGAATTTCGTGCTCAGAATCAGTCTTCAGGGCAGCAACCTCCTCCCCAGCCTGCAGACTCGGCTGTTCCTGAATCGGCCCCAGATAGCAACAACGGCGTAGCAGCAGCAGAAAAGCCCGATGTTTCTGCCCAGTTTAAACCTGTCAGGAAAGTACTTGACCCCCCTGAAGCTGAACAGTATACAGTTCGTCTTCCTGAAGGAATCACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAATTTGTGGCTCGTAATGGGAAATCTTTTTTGACAGGGTTGACAAGTAGGGAAGTTAATAATCCCCAGTTCCATTTTCTTAAACCGACCCACAGCATGTTTACGTTTTTCACTTCCCTTGCCGATGCATATTCAAAGGTTTTGATGCCACCGAAGGGTTTGACGGAGAAGCTAAAGAAGAGCGTCTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAGTGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTCGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGGTGACAGCCATGGAAGAAGACATTGTTGAGCCAGGAAAGGAGGTCGAAATGGAAATGGATGTGGAAGAGGCCCAGCTTGTTGAGGAGGGTATGAGAGCTGCTAGTTTGGAAGACCGTGATGATGGAAAGCAGAATGAAGTCAGGGTTACCGAAGACCCTGAACCACCGATGAGAATTGTTAAGAACTGGAAGAGACCAGAGGAGAGGATTTCTGCAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCCATCACTGGTGAGTTAATTCCTATTAGCGAAATGTCAGAACATATGCGGATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAGACAACTCTGGCTGCGGATGATGAAATTTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTCGGTACTACAGAAGAAGAGGTCTCCAATGCTGTCAAAGCAGAGATTGAGAAGATAAATGATGAGCAACCAAAGCAGGTTATATGGGATGGCCACACTGGTAGTATTGGGCGTACTGCAAACCAAGCCATGTCACAAAATATTGGAAGCGAGGATCAAAATGATGCTTCTAACAATGAAGCCAAGAACCTTCTGGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCTCTGCCACTACCACCCGGACTGGCATTGAATCTTCCTCGTGTTCCTGTCCAATATTCTGCTCCTCATAGTGGTGCCCTTCCAATGCCTCCACCTAGATCCATGATGCCATCTATTCGGCCTGCTCTTCCTCCTCCAATGCCAATGAATACTGGACAGCAGTCAATTATAGCTGGCCAACCACCCCCAATGCATCCATCAATTCCTATGAATAACCATGGAATTCCCATACCCCCACCACCAGGATCTCAGTTCACTCCTGTTCCAGTTCCGCGACCTTATGTTCCTCTTTCTGTTCCACCATCAGTTATGCCTATGATGCATCCACCACCTTTGCCTCAAGGATTGCCACCGCCACCGCCACCAGAGGAGGCTCCTCCTCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAACTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAACATCCTGGCCCTGTCCGCATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTTAAGGGACAAGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACTGTTGGTAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCTGGCTTTCTCAAGGATAATATGTCACTTGCCCATTACAATGTTGGTGGAGGTGAAACACTTACCCTCACCTTAAGAGAACGTGGTGGTAGAAAGAGATGA

Predicted protein sequences of Glyma.20g126000

Limit To All Plant Sequences

>Glyma.20g126000.1.p sequence-type=predicted peptide transcript=Glyma.20g126000.1 locus=Glyma.20g126000 ID=Glyma.20g126000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGSLPILPLPAPPSDGNLGPLPESQVIEEEQNKSNSASVPAPATVVTHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLSEFRAQNQSSGQQPPPQPADSAVPESAPDSNNGVAAAEKPDVSAQFKPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKVTAMEEDIVEPGKEVEMEMDVEEAQLVEEGMRAASLEDRDDGKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGSEDQNDASNNEAKNLLGPAAPPPRPGMPSVRPLPLPPGLALNLPRVPVQYSAPHSGALPMPPPRSMMPSIRPALPPPMPMNTGQQSIIAGQPPPMHPSIPMNNHGIPIPPPPGSQFTPVPVPRPYVPLSVPPSVMPMMHPPPLPQGLPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVRISVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVGGGETLTLTLRERGGRKR*

>Glyma.20g126000.2.p sequence-type=predicted peptide transcript=Glyma.20g126000.2 locus=Glyma.20g126000 ID=Glyma.20g126000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGSLPILPLPAPPSDGNLGPLPESQVIEEEQNKSNSASVPAPATVVTHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLSEFRAQNQSSGQQPPPQPADSAVPESAPDSNNGVAAAEKPDVSAQFKPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKVTAMEEDIVEPGKEVEMEMDVEEAQLVEEGMRAASLEDRDDGKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGSEDQNDASNNEAKNLLGPAAPPPRPGMPSVRPLPLPPGLALNLPRVPVQYSAPHSGALPMPPPRSMMPSIRPALPPPMPMNTGQQSIIAGQPPPMHPSIPMNNHGIPIPPPPGSQFTPVPVPRPYVPLSVPPSVMPMMHPPPLPQGLPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVRISVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVGGGETLTLTLRERGGRKR*

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