Glyma.20g124600

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Report for Sequence Feature Glyma.20g124600

Feature Type:	gene_model
Chromosome:	Gm20
Start:	36699421
stop:	36703193
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g124600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13240.1	AT	transcription regulators	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0016480	GO-bp	negative regulation of transcription by RNA polymerase III	EnsemblGenomes	N/A	IEA
GO:0016480	GO-bp	negative regulation of transcription from RNA polymerase III promoter	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0000994	GO-mf	RNA polymerase III core binding	EnsemblGenomes	N/A	IEA
KOG3104	KOG	Mod5 protein sorting/negative effector of RNA Pol III synthesis	JGI	N/A	IEA
PTHR22504	Panther	REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1	JGI	N/A	IEA
PF09174	PFAM	Maf1 regulator	JGI	N/A	IEA

Expression Patterns of Glyma.20g124600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g124600 not represented in the dataset	Glyma.20g124600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g124600

Paralog	Evidence	Comments
Glyma.10g266000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g124600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g26040	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g124600

Limit To All Plant Sequences

>Glyma.20g124600.2 sequence-type=transcript locus=Glyma.20g124600 ID=Glyma.20g124600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACATGCTTTGGATTCCTAATTTTGACTTTGACCCGTTGGAGAGTCGCTTTGACGGGAAACAAGGGTTTTCGCTGCAATTCTAATCGGTCAAATTGGAATCGTCGGATCAATTTGTCATGAAGTTCCTGGAGTGTTCTGCTTTAGATCGGCTTAATGATTTCTTGGGTAATTTGAATCTGGGAGAACGTACTATCAAAGGATGCCTTGAAGCTTATAGTTGCAAACATGCTGGATCGGATAAAAAACTCTCCATCAGTTTGGAGACAGAGATTCTTGATTATCTTGGGAAATCATCCGACACTGATTCCTCCTCACCAGATCAAACCTTCTTAACCAGAACCAGCCGAAAGACATTGGTTTACCTGGTTCTAACCCTGTATCACATGTATCCCGATTATGACTTCAGTGCAGTTAAGGCTCACCAGTTTTTCACAGAGGAATCACGGGACAGCTTTAAGCAGATTTTTGATACCTACATGCATGAAGCTTCCAAGGAATGGGCTGAAACTGTTGGGGGTGCTTCTTTGCTGGACACCTTGTTCAAGGCCCTTGATGAGGTGGTGAAGTTAGTGGATTGTGATATTTACGGTTATGTCCCTGATTTTGAAGCAGATCCATTACTAGAGAGTGGAGGAACAATATGGTCCTTTAATTTCTTGTTTTACAATAGAAAGCTTAAGCGGATTGTATCTTTTCGATTCAGTTGTTTTAGTAACTTGATTGCTGACGGACTGCTTATTGATGATATACACAATGAGTACGATGAAGAGATATTTGCTGACATGGATATATGAGTCGCTTCTACCTCGATTAGTTAGCATATGAAGACTTCTGATCCTCCCATGTGTAGTTCTGTAATATAAGATGGTTTCAGATGCGTAGTTCTGTATATCAAAGACCGTTTCAGTGTGGCCTGAGTCGTAGATATAGCATATGTATCCGATCCGTATCAATATAGTAGATTTAACATCTGTATCTTCCTCCTATGCACATCGTAGGTTTGGATTCTGTATCATACTCGACTGTTAGGACACACCTCTGGTGTAATATTATCAAAAAACATATTTGAAATTGGTAGAGTATTGTTACATTCATCTGAAAATGATGCTTCTTTTCCTCCGTAATTTTGTTTCCGGAGGGTTAAGGCAAGGGTGCCCCGAGCCACACAGAATTTATTGATCAATAGTTACATTTCTAGCATCTTTGATGCCCGACT

Coding sequences of Glyma.20g124600

Limit To All Plant Sequences

>Glyma.20g124600.1 sequence-type=CDS polypeptide=Glyma.20g124600.1.p locus=Glyma.20g124600 ID=Glyma.20g124600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTCCTGGAGTGTTCTGCTTTAGATCGGCTTAATGATTTCTTGGGTAATTTGAATCTGGGAGAACGTACTATCAAAGGATGCCTTGAAGCTTATAGTTGCAAACATGCTGGATCGGATAAAAAACTCTCCATCAGTTTGGAGACAGAGATTCTTGATTATCTTGGGAAATCATCCGACACTGATTCCTCCTCACCAGATCAAACCTTCTTAACCAGAACCAGCCGAAAGACATTGGTTTACCTGGTTCTAACCCTGTATCACATGTATCCCGATTATGACTTCAGTGCAGTTAAGGCTCACCAGTTTTTCACAGAGGAATCACGGGACAGCTTTAAGCAGATTTTTGATACCTACATGCATGAAGCTTCCAAGGAATGGGCTGAAACTGTTGGGGGTGCTTCTTTGCTGGACACCTTGTTCAAGGCCCTTGATGAGGTGGTGAAGTTAGTGGATTGTGATATTTACGGTTATGTCCCTGATTTTGAAGCAGATCCATTACTAGAGAGTGGAGGAACAATATGGTCCTTTAATTTCTTGTTTTACAATAGAAAGCTTAAGCGGATTGTATCTTTTCGATTCAGTTGTTTTAGTAACTTGATTGCTGACGGACTGCTTATTGATGATATACACAATGAGTACGATGAAGAGATATTTGCTGACATGGATATATGA

>Glyma.20g124600.2 sequence-type=CDS polypeptide=Glyma.20g124600.2.p locus=Glyma.20g124600 ID=Glyma.20g124600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTCCTGGAGTGTTCTGCTTTAGATCGGCTTAATGATTTCTTGGGTAATTTGAATCTGGGAGAACGTACTATCAAAGGATGCCTTGAAGCTTATAGTTGCAAACATGCTGGATCGGATAAAAAACTCTCCATCAGTTTGGAGACAGAGATTCTTGATTATCTTGGGAAATCATCCGACACTGATTCCTCCTCACCAGATCAAACCTTCTTAACCAGAACCAGCCGAAAGACATTGGTTTACCTGGTTCTAACCCTGTATCACATGTATCCCGATTATGACTTCAGTGCAGTTAAGGCTCACCAGTTTTTCACAGAGGAATCACGGGACAGCTTTAAGCAGATTTTTGATACCTACATGCATGAAGCTTCCAAGGAATGGGCTGAAACTGTTGGGGGTGCTTCTTTGCTGGACACCTTGTTCAAGGCCCTTGATGAGGTGGTGAAGTTAGTGGATTGTGATATTTACGGTTATGTCCCTGATTTTGAAGCAGATCCATTACTAGAGAGTGGAGGAACAATATGGTCCTTTAATTTCTTGTTTTACAATAGAAAGCTTAAGCGGATTGTATCTTTTCGATTCAGTTGTTTTAGTAACTTGATTGCTGACGGACTGCTTATTGATGATATACACAATGAGTACGATGAAGAGATATTTGCTGACATGGATATATGA

Predicted protein sequences of Glyma.20g124600

Limit To All Plant Sequences

>Glyma.20g124600.1.p sequence-type=predicted peptide transcript=Glyma.20g124600.1 locus=Glyma.20g124600 ID=Glyma.20g124600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFLECSALDRLNDFLGNLNLGERTIKGCLEAYSCKHAGSDKKLSISLETEILDYLGKSSDTDSSSPDQTFLTRTSRKTLVYLVLTLYHMYPDYDFSAVKAHQFFTEESRDSFKQIFDTYMHEASKEWAETVGGASLLDTLFKALDEVVKLVDCDIYGYVPDFEADPLLESGGTIWSFNFLFYNRKLKRIVSFRFSCFSNLIADGLLIDDIHNEYDEEIFADMDI*

>Glyma.20g124600.2.p sequence-type=predicted peptide transcript=Glyma.20g124600.2 locus=Glyma.20g124600 ID=Glyma.20g124600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFLECSALDRLNDFLGNLNLGERTIKGCLEAYSCKHAGSDKKLSISLETEILDYLGKSSDTDSSSPDQTFLTRTSRKTLVYLVLTLYHMYPDYDFSAVKAHQFFTEESRDSFKQIFDTYMHEASKEWAETVGGASLLDTLFKALDEVVKLVDCDIYGYVPDFEADPLLESGGTIWSFNFLFYNRKLKRIVSFRFSCFSNLIADGLLIDDIHNEYDEEIFADMDI*

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