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Report for Sequence Feature Glyma.20g116100

Feature Type:gene_model
Chromosome:Gm20
Start:35813475
stop:35816910
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g116100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25920.1AT ribosomal protein L15 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0015934GO-cc large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG0846 KOG Mitochondrial/chloroplast ribosomal protein L15/L10 JGI N/AIEA
PTHR12934Panther 50S RIBOSOMAL PROTEIN L15 JGI N/AIEA
PTHR12934:SF2Panther 50S RIBOSOMAL PROTEIN L15, CHLOROPLASTIC JGI N/AIEA
PF00828PFAM Ribosomal protein L18e/L15 JGI N/AIEA

Expression Patterns of Glyma.20g116100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g116100 not represented in the dataset
Glyma.20g116100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g116100
ParalogEvidenceComments
Glyma.10g273900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g116100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g24990 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g116100
>Glyma.20g116100.2 sequence-type=transcript locus=Glyma.20g116100 ID=Glyma.20g116100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGAAAGTGAAAAACTTATCCTATCCGTTATTTGAAGTTCTGTTGGTGAGTGTGAGTGAGTGTATCAATCGGCCACACAGAAATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCCAAATATGTCCATGTAAATCTGAGAGACATAGAAGATGCTAAATTTAAGGAAGGGGAAGAAGTGTCTCTAGAGTCACTGAAGGCGAAAGGTGTGATTAATCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGAGGTATTGTGGTGTTTAACTTTCAACAATAAATGAGGATGCTACTTTCCTAGCAGTAGCACAATCTACCAAAAAGGACTATTCCTCAGACTCAGAGGCCCCTGGTTGCTGTGAATGAAGTTACTTTCTGTAAATTCTTTGATGTTCTTTTATCCTATTTTGGTGTTCAAGTTTATCTGCACTTTTTGGCATGTGTGATAAGCATGTAAGATCAAACATATAATATTTAGGTGGATGTATCGGTGGTTTGAAGCTGTAAATTTGGAATACCTTTCTCATTTGATTTATGAACACCAAAAAATATGTATACTTACATATTTTAGCATTTAATTTTCTCAATTTAAAGACTGTGTGAATTGTCAATCATCTATTTCTTTTATCCATCAGGGATAAATTGGTTTTTTGGTCAGAGGTCTTATTTTTTAGAGTGTCAGTAGTCCACTTTAAAACATACTGCCCTGTGATGATTTTTCAAGCAATGACTATTTTGAAGTCTATAGTTCAGGAAGCAAATATTCAAAGACATTGATTTATTTCCTTTTTCAATATCTTTATGGTGTTCCTTTGTTTTTCATATGATAAAAGCTGATGGCCTTTTCCGTATCTTTATTCTAGAGGCCAAATGATAGACTTGTTTTTCTGTTGAAAATCATCTGTGGGAGAAGAAATGAGATGAAATAGCATTCCCGTCTCAATTCAGTAGAGTCTTTAAATGATCATTTCCTAC

>Glyma.20g116100.3 sequence-type=transcript locus=Glyma.20g116100 ID=Glyma.20g116100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGAAAGTGAAAAACTTATCCTATCCGTTATTTGAAGTTCTGTTGGTGAGTGTGAGTGAGTGTATCAATCGGCCACACAGAAATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTAATTTAATTTCACAACACTCGCTCTCGTTTTTATATCCTATAGTTTTAATCCCCACTCATTTTAATATCCTATCATTGGTACTATTACATGAGTCTTGGATGTAGAAAACTGAATTATATAAG
Coding sequences of Glyma.20g116100
>Glyma.20g116100.1 sequence-type=CDS polypeptide=Glyma.20g116100.1.p locus=Glyma.20g116100 ID=Glyma.20g116100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCCAAATATGTCCATGTAAATCTGAGAGACATAGAAGATGCTAAATTTAAGGAAGGGGAAGAAGTGTCTCTAGAGTCACTGAAGGCGAAAGGTGTGATTAATCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGATCTTGGGTGAAGGAGAACTGAGCAAGAAGTTGACATTAAAAGCCCGCGCCTTTTCCACATCAGCAAAGGAGAAACTTGAGAATGCTGGTTGTTCCCTCACCGTGCTTCCTGGCCGCAAGAAATGGGTTAAGCCATCAGTTGCTAAAAACCTTGCCCGCGCTGATGAATACTTTGCCAAGAAGCGCGCCATGGCTGCTTCCGAGCCAGCCTCAGCTTGA

>Glyma.20g116100.2 sequence-type=CDS polypeptide=Glyma.20g116100.2.p locus=Glyma.20g116100 ID=Glyma.20g116100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCCAAATATGTCCATGTAAATCTGAGAGACATAGAAGATGCTAAATTTAAGGAAGGGGAAGAAGTGTCTCTAGAGTCACTGAAGGCGAAAGGTGTGATTAATCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGAGGTATTGTGGTGTTTAA

>Glyma.20g116100.3 sequence-type=CDS polypeptide=Glyma.20g116100.3.p locus=Glyma.20g116100 ID=Glyma.20g116100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTAATTTAATTTCACAACACTCGCTCTCGTTTTTATATCCTATAGTTTTAATCCCCACTCATTTTAATATCCTATCATTGGTACTATTACATGAGTCTTGGATGTAG
Predicted protein sequences of Glyma.20g116100
>Glyma.20g116100.1.p sequence-type=predicted peptide transcript=Glyma.20g116100.1 locus=Glyma.20g116100 ID=Glyma.20g116100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSASLIPVSWLPWRPLSPFKGTVKTLVAKPWLKKIQQARPLISVVNKAASLSSPVTAPSVGVRFRLDNLGPQPGSRKRAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVHVNLRDIEDAKFKEGEEVSLESLKAKGVINPSGRERRLPLKILGEGELSKKLTLKARAFSTSAKEKLENAGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAMAASEPASA*

>Glyma.20g116100.2.p sequence-type=predicted peptide transcript=Glyma.20g116100.2 locus=Glyma.20g116100 ID=Glyma.20g116100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSASLIPVSWLPWRPLSPFKGTVKTLVAKPWLKKIQQARPLISVVNKAASLSSPVTAPSVGVRFRLDNLGPQPGSRKRAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVHVNLRDIEDAKFKEGEEVSLESLKAKGVINPSGRERRLPLKRYCGV*

>Glyma.20g116100.3.p sequence-type=predicted peptide transcript=Glyma.20g116100.3 locus=Glyma.20g116100 ID=Glyma.20g116100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSASLIPVSWLPWRPLSPFKGTVKTLVAKPWLKKIQQARPLISVVNKAASLSSPVTAPSVGVRFRLDNLGPQPGSRKRAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGNLISQHSLSFLYPIVLIPTHFNILSLVLLHESWM*






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