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Report for Sequence Feature Glyma.20g111800

Feature Type:gene_model
Chromosome:Gm20
Start:35365884
stop:35368136
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g111800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04760.1AT Duplicated homeodomain-like superfamily protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
PTHR25040Panther FAMILY NOT NAMED JGI N/AIEA
PTHR25040:SF29Panther JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA

Proteins Associated with Glyma.20g111800
LocusGene SymbolProtein Name
1-3-1B syringolide-induced protein 1-3-1B

Expression Patterns of Glyma.20g111800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g111800
ParalogEvidenceComments
Glyma.10g277800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g111800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g24600 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g111800
>Glyma.20g111800.1 sequence-type=CDS polypeptide=Glyma.20g111800.1.p locus=Glyma.20g111800 ID=Glyma.20g111800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTCAAGAGAGCAGCGCGACACGGTGGCCGACTCAGCCGACTCAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGGGCTCTGCTGGTCGTGCCGGAGGACCTGCCGGACCGGTGGGAGAAGATCGCCGACCAGGTTCCCGGCAAGTCGGCGGTGGAGGTCAGGGAACACTACGAGGCCCTCGTTCACGACGTCTTCGAGATCGACTCCGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGTGGCGACACCGCCCAGTGGCGGTGCTGAAATTTCTACTTGGGACAACGCTAATCAGATCTCATTCGGGTCCAAGCCTAAGCAACAAGGCGACAACGAAAGGAAGAAGGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTCAGTAAATTTGGGAAAGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAGAAATACTTTCTCCGCCAGAATTCGGTGAAGAAAGAGAGGAAGAGATCAAGCATTCATGACATAACCACTGTGGACAGCAACTCAGTTCCTGTGCCCATTGATCAGAACTGGGTTCCTCCTCCGGGTGGTTCAGTGCAGCAATCACTGCAATACCCATCAAGCAACATGCTCGATCAAATGGGTACATTTGGGTATTCAAACTATGGCTTTGGCATGTAA
Predicted protein sequences of Glyma.20g111800
>Glyma.20g111800.1.p sequence-type=predicted peptide transcript=Glyma.20g111800.1 locus=Glyma.20g111800 ID=Glyma.20g111800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFQESSATRWPTQPTQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRVEVPSYVDDSVATPPSGGAEISTWDNANQISFGSKPKQQGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSVQQSLQYPSSNMLDQMGTFGYSNYGFGM*






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