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Report for Sequence Feature Glyma.20g111500

Feature Type:gene_model
Chromosome:Gm20
Start:35352885
stop:35354998
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g111500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25100.1AT Polynucleotidyl transferase, ribonuclease H-like superfamily protein JGI N/AIEA
GO:0006298GO-bp mismatch repair EnsemblGenomesN/AIEA
GO:0043137GO-bp DNA replication, removal of RNA primer EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0032299GO-cc ribonuclease H2 complex EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0004518GO-mf nuclease activity EnsemblGenomesN/AIEA
GO:0004519GO-mf endonuclease activity EnsemblGenomesN/AIEA
GO:0004523GO-mf RNA-DNA hybrid ribonuclease activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
PTHR10954Panther RIBONUCLEASE H2 SUBUNIT A JGI N/AIEA
PF01351PFAM Ribonuclease HII JGI N/AIEA

Expression Patterns of Glyma.20g111500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g111500 not represented in the dataset
Glyma.20g111500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g111500
ParalogEvidenceComments
Glyma.10g278500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g111500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g24570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g111500
>Glyma.20g111500.1 sequence-type=CDS polypeptide=Glyma.20g111500.1.p locus=Glyma.20g111500 ID=Glyma.20g111500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGCTAAACTCTGCTTTTGCTACTTCTTCGTCTCTTTTCTCTCTTCACTTTTCTATCTTCTATTATTACCACAAAGACAAAGGGTCTTAAGGAGCATAAATTGTGGAATTGAGTACCAAAAGAGAGCTTTTGGAGATGCAGGGAAATATGAAATGAAGCTGTCTAATAGTTCTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGCCTTTACCCCATTGTCAGTGGTGCAAGCATAGTTGCAAAGTCCTATACTGGGTGCTTGATGAGACTGCTGAAAACATGCAGAGGAATTTTTGATCTGGATATCCTGGAGGTAAGACATGTGATTCTATCTCATGCCATATCCCCAAACCAAGTCTTGGCTAGAGGATCACAAAACATCATATCTTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCAAAAGATGCTGCAGAAGTGTTATGGGAGTCTGACAATTTGGATGAAGATGGTGGTGGCAGCAACAATAAGAATCGATTAAGCAATGTGGGTTTCACCACATCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTTATTCTAGCAAGATGTGTACTAGGTACTGTGTCAATTTAATTAATATACTTAATATCTATTAA
Predicted protein sequences of Glyma.20g111500
>Glyma.20g111500.1.p sequence-type=predicted peptide transcript=Glyma.20g111500.1 locus=Glyma.20g111500 ID=Glyma.20g111500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAKLCFCYFFVSFLSSLFYLLLLPQRQRVLRSINCGIEYQKRAFGDAGKYEMKLSNSSPSIKFVVAKKADSLYPIVSGASIVAKSYTGCLMRLLKTCRGIFDLDILEVRHVILSHAISPNQVLARGSQNIISLDFQHWSDLVGEPAKDAAEVLWESDNLDEDGGGSNNKNRLSNVGFTTSKRSEEIESSGKGRCRFFQARKLEHLTYSSKMCTRYCVNLINILNIY*






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