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Report for Sequence Feature Glyma.20g107800

Feature Type:gene_model
Chromosome:Gm20
Start:35038552
stop:35042864
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g107800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68010.1AT hydroxypyruvate reductase JGI N/AIEA
GO:0006098GO-bp pentose-phosphate shunt JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0004616GO-mf phosphogluconate dehydrogenase (decarboxylating) activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0016618GO-mf hydroxypyruvate reductase activity EnsemblGenomesN/AIEA
GO:0030267GO-mf glyoxylate reductase (NADP) activity EnsemblGenomesN/AIEA
GO:0048037GO-mf cofactor binding JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG0069 KOG Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) JGI N/AIEA
PTHR10996Panther 2-HYDROXYACID DEHYDROGENASE-RELATED JGI N/AIEA
PTHR10996:SF22Panther GLYCERATE DEHYDROGENASE HPR, PEROXISOMAL JGI N/AIEA
PF00389PFAM D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JGI N/AIEA
PF02826PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JGI N/AIEA
PWY-181SoyCyc9 photorespiration Plant Metabolic Network ISS
GN7V-67666SoyCyc9-rxn hydroxypyruvate reductase Plant Metabolic Network ISS

Proteins Associated with Glyma.20g107800
LocusGene SymbolProtein Name
P42-1 conversion of hydroxypyruvate to glycerate

Expression Patterns of Glyma.20g107800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g107800 not represented in the dataset
Glyma.20g107800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g107800
ParalogEvidenceComments
Glyma.10g281400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g107800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g24200 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g107800
>Glyma.20g107800.2 sequence-type=transcript locus=Glyma.20g107800 ID=Glyma.20g107800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGAACTCATCTCTTCCCCACATCCTAATGTGGTCACGTTATCTGAAAGGAGCCAAATCCAATATCCAACTTCCAACTATTACACCACAGTTTAGTCATCAACAATATAAGGTTAAAGGAATCATATGTCAAAGTCATTTCCATGCACCAATTTTATTGGTCAGAAATGAGTTAGTATGGTTAAGTATTTCACACTGGATCATCTATTTCTAATATTATAAGCTAAAGGACCAAGAACTGAAATTATTATAACCTCAACTTGAACTATCCATACATAGCCACTTTACACTCACTCTTGTGTTGTTGCCTTCATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAGTGGCAAATACAGAGTTGTTAGCACCAAACCAATGCCTGGAACTCGTTGGATCAATCTTCTCGTTCAAAATGATGTTCGCCTTGAAATATGTACCGAGAAGAAAACGATTCTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAACAGTTGTTCTCTACTTTGAGCAAAGCCGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAACGTGGATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACTGAGACAACAGCTGAGTTGGCAGCTTCATTGTCTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGAGCTGGTCGAATTGGATCCGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTACTATGATCTCTACCAGTCCACACGACTAGAAAAGTTTATCACAGCCTATGCTACATTCTTGAAAGCAAGTGGTGAAACCCCCGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACAGAACCCGATGTTTCGAGTAGGCCTTGACGTGTTTGAGGAAGAGCCCTACATGAAACCCGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACTCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTGCTGGGGAAGATCAAAGGGTACCCAGTTTGGTTTGATGCCAATAGGGTTGAACCATTCCTCAATGAGAATGCTCAACCACCAGCTGCATCCCCAAGCATTGTTAATGCAAAAGCCCTGGGTTTGCCAACTTCAAAGCTATAAACATACATGGTTCTATCCTACAAGGGCCTTCAATTGCACAAATGACCAATTTTTGTCTGTTGAGTTGGGCTCTGTGGCTAGTCTGTTCTTTTTTTTGTGTATGTGGGGTGCTGATGGCACTGTGCATATAAAGACTGTCAGGTTAATAATAGCATCATGTGTTTGTAGTATTTCAAACATTAATTAAACATAAATGAAGTTATACCTTATGTCCCTACACTAGTTTAGTTGGATTGTTTTTACTTTTAAAGGTTAACAACATATTACGAGCCTCCATTCTCACTACAATTTTGATTGTTTTGCACTTAATTTCTATAAATTTTTTCTCATCAAA
Coding sequences of Glyma.20g107800
>Glyma.20g107800.1 sequence-type=CDS polypeptide=Glyma.20g107800.1.p locus=Glyma.20g107800 ID=Glyma.20g107800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAGTGGCAAATACAGAGTTGTTAGCACCAAACCAATGCCTGGAACTCGTTGGATCAATCTTCTCGTTCAAAATGATGTTCGCCTTGAAATATGTACCGAGAAGAAAACGATTCTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAACAGTTGTTCTCTACTTTGAGCAAAGCCGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAACGTGGATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACTGAGACAACAGCTGAGTTGGCAGCTTCATTGTCTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGAGCTGGTCGAATTGGATCCGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTACTATGATCTCTACCAGTCCACACGACTAGAAAAGTTTATCACAGCCTATGCTACATTCTTGAAAGCAAGTGGTGAAACCCCCGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACAGAACCCGATGTTTCGAGTAGGCCTTGACGTGTTTGAGGAAGAGCCCTACATGAAACCCGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACTCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTGCTGGGGAAGATCAAAGGGTACCCAGTTTGGTTTGATGCCAATAGGGTTGAACCATTCCTCAATGAGAATGCTCAACCACCAGCTGCATCCCCAAGCATTGTTAATGCAAAAGCCCTGGGTTTGCCAACTTCAAAGCTATAA

>Glyma.20g107800.2 sequence-type=CDS polypeptide=Glyma.20g107800.2.p locus=Glyma.20g107800 ID=Glyma.20g107800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAGTGGCAAATACAGAGTTGTTAGCACCAAACCAATGCCTGGAACTCGTTGGATCAATCTTCTCGTTCAAAATGATGTTCGCCTTGAAATATGTACCGAGAAGAAAACGATTCTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAACAGTTGTTCTCTACTTTGAGCAAAGCCGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAACGTGGATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACTGAGACAACAGCTGAGTTGGCAGCTTCATTGTCTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGAGCTGGTCGAATTGGATCCGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTACTATGATCTCTACCAGTCCACACGACTAGAAAAGTTTATCACAGCCTATGCTACATTCTTGAAAGCAAGTGGTGAAACCCCCGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACAGAACCCGATGTTTCGAGTAGGCCTTGACGTGTTTGAGGAAGAGCCCTACATGAAACCCGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACTCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTGCTGGGGAAGATCAAAGGGTACCCAGTTTGGTTTGATGCCAATAGGGTTGAACCATTCCTCAATGAGAATGCTCAACCACCAGCTGCATCCCCAAGCATTGTTAATGCAAAAGCCCTGGGTTTGCCAACTTCAAAGCTATAA
Predicted protein sequences of Glyma.20g107800
>Glyma.20g107800.1.p sequence-type=predicted peptide transcript=Glyma.20g107800.1 locus=Glyma.20g107800 ID=Glyma.20g107800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLVQNDVRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEQLFSTLSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFITAYATFLKASGETPVTWKRAATMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKQNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLNENAQPPAASPSIVNAKALGLPTSKL*

>Glyma.20g107800.2.p sequence-type=predicted peptide transcript=Glyma.20g107800.2 locus=Glyma.20g107800 ID=Glyma.20g107800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLVQNDVRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEQLFSTLSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFITAYATFLKASGETPVTWKRAATMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKQNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLNENAQPPAASPSIVNAKALGLPTSKL*






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