Glyma.20g107700

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Report for Sequence Feature Glyma.20g107700

Feature Type:	gene_model
Chromosome:	Gm20
Start:	35033414
stop:	35036538
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g107700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16860.1	AT	GCIP-interacting family protein	JGI	N/A	IEA
GO:0000974	GO-cc	Prp19 complex	EnsemblGenomes	N/A	IEA
GO:0071013	GO-cc	catalytic step 2 spliceosome	EnsemblGenomes	N/A	IEA
GO:0071014	GO-cc	post-mRNA release spliceosomal complex	EnsemblGenomes	N/A	IEA
KOG2609	KOG	Cyclin D-interacting protein GCIP	JGI	N/A	IEA
PTHR13264	Panther	GCIP-INTERACTING PROTEIN P29	JGI	N/A	IEA
PTHR13264:SF5	Panther	PRE-MRNA-SPLICING FACTOR SYF2	JGI	N/A	IEA
PF08231	PFAM	SYF2 splicing factor	JGI	N/A	IEA

Expression Patterns of Glyma.20g107700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g107700 not represented in the dataset	Glyma.20g107700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g107700

Paralog	Evidence	Comments
Glyma.10g281500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g107700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g24190	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g107700

Limit To All Plant Sequences

>Glyma.20g107700.2 sequence-type=transcript locus=Glyma.20g107700 ID=Glyma.20g107700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAACTGCGGACACAATACATGTGTTCATCGAAAAAATATTTTTTCATTCTTTTAGCAAAACTATATCCGCAATTCAGCCTCTCCGGGGCGGGAGGCAGAGATGATCAAACGAACCGTAGGGCGCTGCATTATTACAGAATAATAACACAAACCCTAGTCCCAAAAATCAAAAAGGAAAAAAAAATCAGATAACAAACTTATCACTTCGCTGCGAGATTCAATTCCCATCTTTAAAATTCTCAAATCCGAATTCGATTCCCAATTCCGCCTCTTGTTCAGAAATTGATTCTGTGTCGTTACAGGGGAAAATTTCTCTGCACGACATGTCTGATGAACGAGCAGTGCATCCTGATTGCCGGAATGCTAGTAACCCTTATCATGAATGTAGTGATTACTGTTTTAGAGTAATAGCTGAAGCCAAAATTAGGTCACAACAACAGGAATCAGTTGGACAAGCTAGTGGTGGAAACAACTCTAAGCAAGCCATCCCAGATGAATCCTATGTGGAAAAGGAAATACACAATGGCAGACCCGATCTTGAAGAAAACTCTGATAGTGATCCTGACCAGCCTGCTGTGCAGGAAGCAGAGCAAGAGGTTGACTACACAAAACTTTCTGCGAGACAGAAAAAGTGGATGGAGTTGAGATCCAAGATGCAAGAAGCAAAAAAGCGTAATCAAATTGAAATAGCTGCTGAGAAAAAGAGGATGGAAGCTCCAACCGAGTCTAGGGGTGTTTCTAAACAGAAGTGGCTCGAGGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGATTGGATATGACAAAGGCATATATGCTTGACACACAGGAGGCAGCAGAAGAAAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTTGGGTGGGACGTCTTTAATCAGAAGACATTATACAATGCATACAAAAAGCGGACCAAGAATGTTGAAGTCGATGTAGAAGAATATAATAGAATGAAAGAAGCTGATCCAGAGTTTTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAATCTCAGAGGAGAAGATTGATAGGATGGTACGGGAGCTAAAGGATAGGGATGAGAAGCGCAACTCTTTTAGCAGGAGAAGACGCTTCCATGAAGAGAAAGATATTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGCTGGAGATTAAAAATAATCTTGAGCGAGGAACTGCATTGCCTGACTAAGGTACTTATGTAGTGATGTGTTTTATTTCACACTGTCCTGATAGTGATAAGTTTCAGTGGTGGATTGCACTTTTTAGAGTGCTTTTTAATCATGTAATACTATAGTCTAATATTTTGCAATGCACATGGAGCATTGCGGAGTCATTTCGAACTTCAAACATTATATGCTTGCTTGAGATATGGGTTCTTCTTAGAGGTACTCTTTCCAGTCATTATGTAGATATGGAATTTATACCTCCCCACGTATATGTAAGTCTGAGTTTGATCGGGGTTAGGTTTTTTTCCCTCTCCTTTCATTTGGGATCGTGATCTAATGCATTTGGGATTTAATTTGTTATCACTTTTCGTAGGGCTCTAAAAATTGTAGTTAACTCATTTGAATTGATGGAAAGGAGTAGGAATAGAATGAAATTTAGGCTTTGTTTGGATTGAAGAAATGGCATGAGATGAAGGAATGAAATGAACTTTTAATTAGTTCTATTGTTTGGATTACTTAAACCACAATGGAATCAAAAAGAGATCGAACATTTCCTTTC

>Glyma.20g107700.3 sequence-type=transcript locus=Glyma.20g107700 ID=Glyma.20g107700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCTCTTTCATTCGTTCGTTCAATGTTTACTGCTGACTGGCGGAACATCAAACAGCAACATAATCCTCAACTGGGAAAATTTCTCTGCACGACATGTCTGATGAACGAGCAGTGCATCCTGATTGCCGGAATGCTAGTAACCCTTATCATGAATGTAGTGATTACTGTTTTAGAGTAATAGCTGAAGCCAAAATTAGGTCACAACAACAGGAATCAGAAGTTGGACAAGCTAGTGGTGGAAACAACTCTAAGCAAGCCATCCCAGATGAATCCTATGTGGAAAAGGAAATACACAATGGCAGACCCGATCTTGAAGAAAACTCTGATAGTGATCCTGACCAGCCTGCTGTGCAGGAAGCAGAGCAAGAGGTTGACTACACAAAACTTTCTGCGAGACAGAAAAAGTGGATGGAGTTGAGATCCAAGATGCAAGAAGCAAAAAAGCGTAATCAAATTGAAATAGCTGCTGAGAAAAAGAGGATGGAAGCTCCAACCGAGTCTAGGGGTGTTTCTAAACAGAAGTGGCTCGAGGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGATTGGATATGACAAAGGCATATATGCTTGACACACAGGAGGCAGCAGAAGAAAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTTGGGTGGGACGTCTTTAATCAGAAGACATTATACAATGCATACAAAAAGCGGACCAAGAATGTTGAAGTCGATGTAGAAGAATATAATAGAATGAAAGAAGCTGATCCAGAGTTTTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAATCTCAGAGGAGAAGATTGATAGGATGGTACGGGAGCTAAAGGATAGGGATGAGAAGCGCAACTCTTTTAGCAGGAGAAGACGCTTCCATGAAGAGAAAGATATTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGCTGGAGATTAAAAATAATCTTGAGCGAGGAACTGCATTGCCTGACTAAGGTACTTATGTAGTGATGTGTTTTATTTCACACTGTCCTGATAGTGATAAGTTTCAGTGGTGGATTGCACTTTTTAGAGTGCTTTTTAATCATGTAATACTATAGTCTAATATTTTGCAATGCACATGGAGCATTGCGGAGTCATTTCGAACTTCAAACATTATATGCTTGCTTGAGATATGGGTTCTTCTTAGAGGTACTCTTTCCAGTCATTATGTAGATATGGAATTTATACCTCCCCACGTATATGTAAGTCTGAGTTTGATCGGGGTTAGGTTTTTTTCCCTCTCCTTTCATTTGGGATCGTGATCTAATGCATTTGGGATTTAATTTGTTATCACTTTTCGTAGGGCTCTAAAAATTGTAGTTAACTCATTTGAATTGATGGAAAGGAGTAGGAATAGAATGAAATTTAGGCTTTGTTTGGATTGAAGAAATGGCATGAGATGAAGGAATGAAATGAACTTTTAATTAGTTCTATTGTTTGGATTACTTAAACCACAATGGAATCAAAAAGAGATCGAACATTTCCTTTC

Coding sequences of Glyma.20g107700

Limit To All Plant Sequences

>Glyma.20g107700.1 sequence-type=CDS polypeptide=Glyma.20g107700.1.p locus=Glyma.20g107700 ID=Glyma.20g107700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGATGAACGAGCAGTGCATCCTGATTGCCGGAATGCTAGTAACCCTTATCATGAATGTAGTGATTACTGTTTTAGAGTAATAGCTGAAGCCAAAATTAGGTCACAACAACAGGAATCAGAAGTTGGACAAGCTAGTGGTGGAAACAACTCTAAGCAAGCCATCCCAGATGAATCCTATGTGGAAAAGGAAATACACAATGGCAGACCCGATCTTGAAGAAAACTCTGATAGTGATCCTGACCAGCCTGCTGTGCAGGAAGCAGAGCAAGAGGTTGACTACACAAAACTTTCTGCGAGACAGAAAAAGTGGATGGAGTTGAGATCCAAGATGCAAGAAGCAAAAAAGCGTAATCAAATTGAAATAGCTGCTGAGAAAAAGAGGATGGAAGCTCCAACCGAGTCTAGGGGTGTTTCTAAACAGAAGTGGCTCGAGGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGATTGGATATGACAAAGGCATATATGCTTGACACACAGGAGGCAGCAGAAGAAAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTTGGGTGGGACGTCTTTAATCAGAAGACATTATACAATGCATACAAAAAGCGGACCAAGAATGTTGAAGTCGATGTAGAAGAATATAATAGAATGAAAGAAGCTGATCCAGAGTTTTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAATCTCAGAGGAGAAGATTGATAGGATGGTACGGGAGCTAAAGGATAGGGATGAGAAGCGCAACTCTTTTAGCAGGAGAAGACGCTTCCATGAAGAGAAAGATATTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGCTGGAGATTAAAAATAATCTTGAGCGAGGAACTGCATTGCCTGACTAA

>Glyma.20g107700.2 sequence-type=CDS polypeptide=Glyma.20g107700.2.p locus=Glyma.20g107700 ID=Glyma.20g107700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGATGAACGAGCAGTGCATCCTGATTGCCGGAATGCTAGTAACCCTTATCATGAATGTAGTGATTACTGTTTTAGAGTAATAGCTGAAGCCAAAATTAGGTCACAACAACAGGAATCAGTTGGACAAGCTAGTGGTGGAAACAACTCTAAGCAAGCCATCCCAGATGAATCCTATGTGGAAAAGGAAATACACAATGGCAGACCCGATCTTGAAGAAAACTCTGATAGTGATCCTGACCAGCCTGCTGTGCAGGAAGCAGAGCAAGAGGTTGACTACACAAAACTTTCTGCGAGACAGAAAAAGTGGATGGAGTTGAGATCCAAGATGCAAGAAGCAAAAAAGCGTAATCAAATTGAAATAGCTGCTGAGAAAAAGAGGATGGAAGCTCCAACCGAGTCTAGGGGTGTTTCTAAACAGAAGTGGCTCGAGGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGATTGGATATGACAAAGGCATATATGCTTGACACACAGGAGGCAGCAGAAGAAAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTTGGGTGGGACGTCTTTAATCAGAAGACATTATACAATGCATACAAAAAGCGGACCAAGAATGTTGAAGTCGATGTAGAAGAATATAATAGAATGAAAGAAGCTGATCCAGAGTTTTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAATCTCAGAGGAGAAGATTGATAGGATGGTACGGGAGCTAAAGGATAGGGATGAGAAGCGCAACTCTTTTAGCAGGAGAAGACGCTTCCATGAAGAGAAAGATATTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGCTGGAGATTAAAAATAATCTTGAGCGAGGAACTGCATTGCCTGACTAA

>Glyma.20g107700.3 sequence-type=CDS polypeptide=Glyma.20g107700.3.p locus=Glyma.20g107700 ID=Glyma.20g107700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGATGAACGAGCAGTGCATCCTGATTGCCGGAATGCTAGTAACCCTTATCATGAATGTAGTGATTACTGTTTTAGAGTAATAGCTGAAGCCAAAATTAGGTCACAACAACAGGAATCAGAAGTTGGACAAGCTAGTGGTGGAAACAACTCTAAGCAAGCCATCCCAGATGAATCCTATGTGGAAAAGGAAATACACAATGGCAGACCCGATCTTGAAGAAAACTCTGATAGTGATCCTGACCAGCCTGCTGTGCAGGAAGCAGAGCAAGAGGTTGACTACACAAAACTTTCTGCGAGACAGAAAAAGTGGATGGAGTTGAGATCCAAGATGCAAGAAGCAAAAAAGCGTAATCAAATTGAAATAGCTGCTGAGAAAAAGAGGATGGAAGCTCCAACCGAGTCTAGGGGTGTTTCTAAACAGAAGTGGCTCGAGGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGATTGGATATGACAAAGGCATATATGCTTGACACACAGGAGGCAGCAGAAGAAAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTTGGGTGGGACGTCTTTAATCAGAAGACATTATACAATGCATACAAAAAGCGGACCAAGAATGTTGAAGTCGATGTAGAAGAATATAATAGAATGAAAGAAGCTGATCCAGAGTTTTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAATCTCAGAGGAGAAGATTGATAGGATGGTACGGGAGCTAAAGGATAGGGATGAGAAGCGCAACTCTTTTAGCAGGAGAAGACGCTTCCATGAAGAGAAAGATATTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGCTGGAGATTAAAAATAATCTTGAGCGAGGAACTGCATTGCCTGACTAA

Predicted protein sequences of Glyma.20g107700

Limit To All Plant Sequences

>Glyma.20g107700.1.p sequence-type=predicted peptide transcript=Glyma.20g107700.1 locus=Glyma.20g107700 ID=Glyma.20g107700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESEVGQASGGNNSKQAIPDESYVEKEIHNGRPDLEENSDSDPDQPAVQEAEQEVDYTKLSARQKKWMELRSKMQEAKKRNQIEIAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKWEKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKISEEKIDRMVRELKDRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD*

>Glyma.20g107700.2.p sequence-type=predicted peptide transcript=Glyma.20g107700.2 locus=Glyma.20g107700 ID=Glyma.20g107700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESVGQASGGNNSKQAIPDESYVEKEIHNGRPDLEENSDSDPDQPAVQEAEQEVDYTKLSARQKKWMELRSKMQEAKKRNQIEIAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKWEKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKISEEKIDRMVRELKDRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD*

>Glyma.20g107700.3.p sequence-type=predicted peptide transcript=Glyma.20g107700.3 locus=Glyma.20g107700 ID=Glyma.20g107700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDERAVHPDCRNASNPYHECSDYCFRVIAEAKIRSQQQESEVGQASGGNNSKQAIPDESYVEKEIHNGRPDLEENSDSDPDQPAVQEAEQEVDYTKLSARQKKWMELRSKMQEAKKRNQIEIAAEKKRMEAPTESRGVSKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKWEKDPAPFGWDVFNQKTLYNAYKKRTKNVEVDVEEYNRMKEADPEFYRDASSLQYGKAPKISEEKIDRMVRELKDRDEKRNSFSRRRRFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD*

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