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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05320.1 | AT | FAD/NAD(P)-binding oxidoreductase family protein | JGI | N/A | IEA |
| GO:0016117 | GO-bp | carotenoid biosynthetic process | JGI | N/A | IEA |
| GO:0044550 | GO-bp | secondary metabolite biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0004497 | GO-mf | monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | JGI | N/A | IEA |
| GO:0071949 | GO-mf | FAD binding | EnsemblGenomes | N/A | IEA |
| KOG2614 | KOG | Kynurenine 3-monooxygenase and related flavoprotein monooxygenases | JGI | N/A | IEA |
| PTHR13789 | Panther | MONOOXYGENASE | JGI | N/A | IEA |
| PTHR13789:SF6 | Panther | JGI | N/A | IEA | |
| PF01494 | PFAM | FAD binding domain | JGI | N/A | IEA |
| GN7V-66451 | SoyCyc9-rxn | trimethylurate monooxygenase | Plant Metabolic Network | ISS |
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Glyma.20g107200 not represented in the dataset |
Glyma.20g107200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g282100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g24140 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g107200.2 sequence-type=transcript locus=Glyma.20g107200 ID=Glyma.20g107200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AATCGTCGCATTACATGTGCTCTCATCAGTGATCTGGTGCTCGTCATCTTTCACTAATACATTCTCTATATAAACGGTTATCATCTCAGAAAGTACAAATTAAAGCACCTTATTTAGCTCTGGGAACAAGGATTTTAAAGTTACTAAATCAAAGGCTAGCTAGTACTAAAAAGATTGATCATCTTAATTTCCACGGAAAAAAAAAAGATCGAAAGTAATAATGGAATCACTACTTGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGGCTCGCAACATCCTTGGCTCTTCATAGGTTGGGTGTCCAAAGTTTGGTGTTAGAATATTCAGATACTTTGAGGGTCACTGGATTTGCTTTAACAACATGGACTAACGCTTGGAAAGCCTTGGATGCTCTTGGCGTCGGAGCCATTCTTCGTCACCAACATGTCCAGCTAAAAGAGAATGTGACTACATCTTTGATTATGGGGCAACAAACATCAAGCTTGTCTTTCGAGGGCACAGGAAAACATGGAGACTGTGAAGTTCGTTGTGTTAGAAGACAGTTAATGTTGGAAGCAATTGCTAACGTGCTTCCAAGTGGAACCATCAGATTCTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTCTAAGATTAAGATAGTCCGTCTTGCTGATGGAACAAGCATCAAAACCAAGGTATTGATTGGGTGTGATGGAATAAACTCCGTGGTGGCAAAGTGGTTGGGCTTCAAAGAGGCCTCTTTTACCGGGAGATACGTAATCAGGGGTTACAAAAAGGTGATGGATAATCATGGGCTTGAGCCCAAATTCATGCACTACTTTGGGAAGGGCTTTCGATCTGGTGTAATGCCATGTGATGACAAAACTGTTTATTGGTTTCTAACTTGGACTCCCACCAGTGAAGAGAAGGAGCTAGCAAATAACCCATCCAAAATGAAGCAATTGGTGTTGAGAAAGGTTGAGAAGATGCCAAGTAATATTAAAACCTTTATAGAGAAAACAGACCCAAAAGACATTTTAACATCTCCATTGAGATATAGACATCAGTGGGAGCTCATGTTGGGGAACATTAGCAAAGGCAATGTTTGTGTTGTTGGAGATGCATTTCACCCCATGGCCCCTGACCTAGGGCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGGTATCTAGCTGAGGCCTTCTCCAGAAAAACTTGCAAACATGTTGTTAAAAAGATGGGTGAAGAGGGGTGATTTGAAAATGGTTGCACATTTTAGGGACAAAGTTTTGCCTGATTTCCTAGCCGAACTGCTGTTGAAGAAGTCAGATTTTGATTGTGGAAAACTTAACGCCTCTAGTTAATCGAATAATATAATTAACCATGCATGCTCTCTTGTACTTAAAAAATGTGTAACTGTATGAATAGCGATTTCTAAGAATTATAATGCACTGCTGTGGAAAATTTTGTTGTCTATATTGTCTCTCGTGTGGTCTTTAAAACAACAAATGTACTACTGCAGAAAAGCCTGAGCCCTGAGGTCCCTGTTACACTTTCGTGCAAGAATAAAGATTTATTTTTTCACTTTAATGTTTTTTTATCATTAAATA
>Glyma.20g107200.1 sequence-type=CDS polypeptide=Glyma.20g107200.1.p locus=Glyma.20g107200 ID=Glyma.20g107200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAATCACTACTTGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGGCTCGCAACATCCTTGGCTCTTCATAGGTTGGGTGTCCAAAGTTTGGTGTTAGAATATTCAGATACTTTGAGGGTCACTGGATTTGCTTTAACAACATGGACTAACGCTTGGAAAGCCTTGGATGCTCTTGGCGTCGGAGCCATTCTTCGTCACCAACATGTCCAGCTAAAAGAGAATGTGACTACATCTTTGATTATGGGGCAACAAACATCAAGCTTGTCTTTCGAGGGCACAGGAAAACATGGAGACTGTGAAGTTCGTTGTGTTAGAAGACAGTTAATGTTGGAAGCAATTGCTAACGTGCTTCCAAGTGGAACCATCAGATTCTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTCTAAGATTAAGATAGTCCGTCTTGCTGATGGAACAAGCATCAAAACCAAGGTATTGATTGGGTGTGATGGAATAAACTCCGTGGTGGCAAAGTGGTTGGGCTTCAAAGAGGCCTCTTTTACCGGGAGATACGTAATCAGGGGTTACAAAAAGGTGATGGATAATCATGGGCTTGAGCCCAAATTCATGCACTACTTTGGGAAGGGCTTTCGATCTGGTGTAATGCCATGTGATGACAAAACTGTTTATTGGTTTCTAACTTGGACTCCCACCAGTGAAGAGAAGGAGCTAGCAAATAACCCATCCAAAATGAAGCAATTGGTGTTGAGAAAGGTTGAGAAGATGCCAAGTAATATTAAAACCTTTATAGAGAAAACAGACCCAAAAGACATTTTAACATCTCCATTGAGATATAGACATCAGTGGGAGCTCATGTTGGGGAACATTAGCAAAGGCAATGTTTGTGTTGTTGGAGATGCATTTCACCCCATGGCCCCTGACCTAGGGCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGGTATCTAGCTGAGGCCTTCTCCAGAAAAACTTGCAAACATGTTGTTAAAAAGATGGGTGAAGAGGGTAAGGCCAAGGAGCAATACAAAAAAATTGATGCTAGCTTGAGGAAATATGCAAAAGAGAGAAGATGGAGAAACATTGATATAAGTGTTACATCTTATGTTCTGGGGTTTGTTTTGCAGGGTGATTTGAAAATGGTTGCACATTTTAGGGACAAAGTTTTGCCTGATTTCCTAGCCGAACTGCTGTTGAAGAAGTCAGATTTTGATTGTGGAAAACTTAACGCCTCTAGTTAA >Glyma.20g107200.2 sequence-type=CDS polypeptide=Glyma.20g107200.2.p locus=Glyma.20g107200 ID=Glyma.20g107200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAATCACTACTTGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGGCTCGCAACATCCTTGGCTCTTCATAGGTTGGGTGTCCAAAGTTTGGTGTTAGAATATTCAGATACTTTGAGGGTCACTGGATTTGCTTTAACAACATGGACTAACGCTTGGAAAGCCTTGGATGCTCTTGGCGTCGGAGCCATTCTTCGTCACCAACATGTCCAGCTAAAAGAGAATGTGACTACATCTTTGATTATGGGGCAACAAACATCAAGCTTGTCTTTCGAGGGCACAGGAAAACATGGAGACTGTGAAGTTCGTTGTGTTAGAAGACAGTTAATGTTGGAAGCAATTGCTAACGTGCTTCCAAGTGGAACCATCAGATTCTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTCTAAGATTAAGATAGTCCGTCTTGCTGATGGAACAAGCATCAAAACCAAGGTATTGATTGGGTGTGATGGAATAAACTCCGTGGTGGCAAAGTGGTTGGGCTTCAAAGAGGCCTCTTTTACCGGGAGATACGTAATCAGGGGTTACAAAAAGGTGATGGATAATCATGGGCTTGAGCCCAAATTCATGCACTACTTTGGGAAGGGCTTTCGATCTGGTGTAATGCCATGTGATGACAAAACTGTTTATTGGTTTCTAACTTGGACTCCCACCAGTGAAGAGAAGGAGCTAGCAAATAACCCATCCAAAATGAAGCAATTGGTGTTGAGAAAGGTTGAGAAGATGCCAAGTAATATTAAAACCTTTATAGAGAAAACAGACCCAAAAGACATTTTAACATCTCCATTGAGATATAGACATCAGTGGGAGCTCATGTTGGGGAACATTAGCAAAGGCAATGTTTGTGTTGTTGGAGATGCATTTCACCCCATGGCCCCTGACCTAGGGCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGGTATCTAGCTGAGGCCTTCTCCAGAAAAACTTGCAAACATGTTGTTAAAAAGATGGGTGAAGAGGGGTGA
>Glyma.20g107200.1.p sequence-type=predicted peptide transcript=Glyma.20g107200.1 locus=Glyma.20g107200 ID=Glyma.20g107200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MESLLVEDIVIVGAGIAGLATSLALHRLGVQSLVLEYSDTLRVTGFALTTWTNAWKALDALGVGAILRHQHVQLKENVTTSLIMGQQTSSLSFEGTGKHGDCEVRCVRRQLMLEAIANVLPSGTIRFLSKVVAIEESGFSKIKIVRLADGTSIKTKVLIGCDGINSVVAKWLGFKEASFTGRYVIRGYKKVMDNHGLEPKFMHYFGKGFRSGVMPCDDKTVYWFLTWTPTSEEKELANNPSKMKQLVLRKVEKMPSNIKTFIEKTDPKDILTSPLRYRHQWELMLGNISKGNVCVVGDAFHPMAPDLGQGGCCALEDGIILARYLAEAFSRKTCKHVVKKMGEEGKAKEQYKKIDASLRKYAKERRWRNIDISVTSYVLGFVLQGDLKMVAHFRDKVLPDFLAELLLKKSDFDCGKLNASS* >Glyma.20g107200.2.p sequence-type=predicted peptide transcript=Glyma.20g107200.2 locus=Glyma.20g107200 ID=Glyma.20g107200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MESLLVEDIVIVGAGIAGLATSLALHRLGVQSLVLEYSDTLRVTGFALTTWTNAWKALDALGVGAILRHQHVQLKENVTTSLIMGQQTSSLSFEGTGKHGDCEVRCVRRQLMLEAIANVLPSGTIRFLSKVVAIEESGFSKIKIVRLADGTSIKTKVLIGCDGINSVVAKWLGFKEASFTGRYVIRGYKKVMDNHGLEPKFMHYFGKGFRSGVMPCDDKTVYWFLTWTPTSEEKELANNPSKMKQLVLRKVEKMPSNIKTFIEKTDPKDILTSPLRYRHQWELMLGNISKGNVCVVGDAFHPMAPDLGQGGCCALEDGIILARYLAEAFSRKTCKHVVKKMGEEG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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