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Report for Sequence Feature Glyma.20g097700

Feature Type:gene_model
Chromosome:Gm20
Start:34078389
stop:34090547
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g097700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26860.1AT lon protease 1 JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0006515GO-bp protein quality control for misfolded or incompletely synthesized proteins EnsemblGenomesN/AIEA
GO:0007005GO-bp mitochondrion organization EnsemblGenomesN/AIEA
GO:0030163GO-bp protein catabolic process EnsemblGenomesN/AIEA
GO:0034599GO-bp cellular response to oxidative stress EnsemblGenomesN/AIEA
GO:0051131GO-bp chaperone-mediated protein complex assembly EnsemblGenomesN/AIEA
GO:0070407GO-bp oxidation-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0090296GO-bp regulation of mitochondrial DNA replication EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0004176GO-mf ATP-dependent peptidase activity EnsemblGenomesN/AIEA
GO:0004176GO-mf ATP-dependent peptidase activity JGI N/AIEA
GO:0004252GO-mf serine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004252GO-mf serine-type endopeptidase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
GO:0009378GO-mf four-way junction helicase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
KOG2004 KOG Mitochondrial ATP-dependent protease PIM1/LON JGI N/AIEA
PTHR10046Panther ATP DEPENDENT LON PROTEASE FAMILY MEMBER JGI N/AIEA
PTHR10046:SF23Panther LON PROTEASE HOMOLOG, MITOCHONDRIAL JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF02190PFAM ATP-dependent protease La (LON) domain JGI N/AIEA
PF05362PFAM Lon protease (S16) C-terminal proteolytic domain JGI N/AIEA

Expression Patterns of Glyma.20g097700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g097700 not represented in the dataset
Glyma.20g097700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g097700
ParalogEvidenceComments
Glyma.10g147200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g097700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g23010 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g097700
>Glyma.20g097700.1 sequence-type=CDS polypeptide=Glyma.20g097700.1.p locus=Glyma.20g097700 ID=Glyma.20g097700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCAACCTTCAATTCTGAAAATCCCATTGCCAATGTTGAAGCTCATTGCATCCTCCTCGCGCATCCACCGGGTGCACCCCACGGTGCTCCGTCCCGCACACGATTCCGCCTCGCCGCTGCTCAGAGTGCTGAGTTCTCTCGTCGGGTTAAGCTGGAGAAACACTAATGTTGGAGGCAGGTATTTTTTCTGTTCCGGTTCCAGCGACAGCTCCGATCGCGTGGTTGACGCCGGAGTCCAAGCCGCCGATGAGTCCGAGTCAAAGGCCTCCGCTATCGTTCCCACATATCCCAGACCCGAAGATTATCTCACTGTTTTGGCACTACCATTGATACATAGACCACTTTTCCCAGGATTTTACATGCCAGTCTTTGTTAAGGATCCCAAATTATTAGCAGCTTTACAGGAAAGTCGAGAACGACAAGCCCCATATGCTGGTGCTTTCCTCCTTAAGGACGAGCCAGAGGCTGATCCTAGTGCAGTATCTAGCTCTGACACAGATAAGAATGTATATGATTTAAAAGGAAAAGAGTTGTTTAACCGTCTTCACGAAGTTGGGACTCTTGCTCAGATTTCAAGTATCCATGGGGACCAGGTGATCCTGATTGGTCATCGGCGTCTACGTATAACAGAGATGGTTAGTGAGGATCCACTTACTGTAAAAGTTGATCATCTCAAGGATAAAACTTATAACAAAGACGATGATATTATAAAGGCCACGTCTTTTGAGGTTATATCAACCCTAAGAGATGTTCTTAAAACAAGTTCCCTTTGGAGAGATCATGTCCAGACTTACACTAAGCATATAGGTGATTTTACTTATCCAAGGCTTGCAGATTTTGGTGCTGCAATATCCGGGGCAAATAAATTGCAATGCCAACAAGTTCTTGAAGAGCTAGATGTGTATAAGCGATTAAAACTTACACTGGAGTTGGTAAAGAAAGAGATGGAAATAAGCAAAATTCAGGAATCAATTGCTAAAGCAATTGAAGAAAAGATAAGTGGTGAGCAGCGTCGTTACTTGTTAAATGAGCAGCTTAAGGCCATAAAGAAGGAACTGGGACTGGAGACTGATGACAAAACAGCTCTTACTGGTAAATTCAGGGAAAGGATTGAGCCAAAGAGAGAAAAATGCCCACCTCATATTTTACAAGTTATAGATGAAGAACTTGCAAAGCTACAGCTGTTGGAGGCTAGTTCTAGTGAATTCAGTGTTACCCGTAACTACTTAGACTGGTTGACTGCACTGCCTTGGGGTGAATACAGTGATGAGAACTTTGATGTTACTCGGGCGCAAAAGATTCTTGATGAAGACCATTATGGATTAACTGATGTGAAGGAAAGGATACTGGAATTCATAGCTGTTGGGAAATTAAGAGGGACTTCACAAGGGAAAATTATCTGTCTTTCTGGTCCACCTGGAGTGGGCAAAACAAGTATTGGTCGTTCAATTGCACGTGCCTTGAACCGTAAGTTCTTCCGATTCTCTGTAGGAGGATTAGCTGATGTGGCTGAAATCAAGGGTCATCGTCGAACCTATATTGGTGCTATGCCAGGGAAGATGGTACAATGCCTTAAGAATGTGGGCACTGCCAACCCTCTTGTTTTGATTGATGAGATTGACAAATTGGGCAGAGGACATGCTGGTGATCCAGCAAGTGCTTTGTTAGAGCTTCTGGATCCAGAGCAGAATGCTAATTTTCTGGATCACTATCTTGATGTTACCATTGATCTATCAAAGGTTCTTTTTGTTTGCACTGCAAATGTTGTGGAAATGATACCTAATCCCCTGTTGGATAGAATGGAGGTTGTTGCTATTGCTGGGTATATTACTGATGAGAAGATGCATATTGCTAGAGATTATCTGGAGAAGACCACTCGTGAAGCTTGTGGAATAAAGCCTAAACAAGTGGAAGTGACTGATGCTGCTATTCTTGCCCTAATAGAAAACTACTGCCGAGAAGCAGGGGTCAGGAATCTTCAAAAGCACATAGAAAAAATTTACCGAAAGATAGCGCTACAACTCGTGAGGCAAGGGGAAATGATTGATGCAACCGTGGAACCAATAAAAGAAAATATAGACTCTGATGAATTTGGTCAAAATACAGTTCAAAATAAGAACTCCGAGTTGGTGGAGGGTAGTGATCCTGAAAAAGAGGGTGAAACCTCTGATAAAGTTGACAAGGTGCAAACAGATCTATCATCTGATGAATCTCAATGCCTCGAGGTTGCAAAAGAAAGCGAGGAAGATAAGGAAATTAAAACAAAGACTATAGAAAAAGTATTGGTTGATGAGTCTAATTTAACTGACTTTGTTGGCAAGCCTGTCTTCCATGCTGAGCGCATCTATGATCAGACACCCGTTGGTGTTGTTATGGGTCTTGCTTGGACTGCAATGGGTGGTTCCACACTGTATATAGAGACCACACTTGTTGAAGAAGGGGAGGGAAAAGGAACACTGCACCCCACTGGTCAATTAGGAGATGTGATGAAAGAAAGTGCTCAGATAGCTCACACTGTTGCCAGAGCAATACTACTGGAAAAAGAACCAGAAAATCCTTTCTTTGCAAACTCAAAACTACACCTCCATGTCCCTGCAGGGGCTACACCAAAGGATGGACCAAGTGCTGGTTGCACGATGACCACTTCACTGTTGTCCCTTGCCATGAAGAAGCCTGTGAAGAAGGATCTAGCAATGACTGGGGAAGTGACTCTTACGGGGAAGATTCTTCCCATTGGCGGGGTTAAAGAGAAAACCATAGCTGCAAGAAGGAGTGAAGTTAAGACTATTATATTCCCTTCAGCTAACAGGAGAGATTTTGATGAGCTAGCACCTAATGTGAAAGAAGGTCTTGATGTTCATTTTGTTGATGACTACATGCAGATATTTAATTTGGCTTTGGGTGATGATCAATCTCAGAATATAGAGAGAGTCATTAATGTTCTGTAG
Predicted protein sequences of Glyma.20g097700
>Glyma.20g097700.1.p sequence-type=predicted peptide transcript=Glyma.20g097700.1 locus=Glyma.20g097700 ID=Glyma.20g097700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNQPSILKIPLPMLKLIASSSRIHRVHPTVLRPAHDSASPLLRVLSSLVGLSWRNTNVGGRYFFCSGSSDSSDRVVDAGVQAADESESKASAIVPTYPRPEDYLTVLALPLIHRPLFPGFYMPVFVKDPKLLAALQESRERQAPYAGAFLLKDEPEADPSAVSSSDTDKNVYDLKGKELFNRLHEVGTLAQISSIHGDQVILIGHRRLRITEMVSEDPLTVKVDHLKDKTYNKDDDIIKATSFEVISTLRDVLKTSSLWRDHVQTYTKHIGDFTYPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALTGKFRERIEPKREKCPPHILQVIDEELAKLQLLEASSSEFSVTRNYLDWLTALPWGEYSDENFDVTRAQKILDEDHYGLTDVKERILEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVTIDLSKVLFVCTANVVEMIPNPLLDRMEVVAIAGYITDEKMHIARDYLEKTTREACGIKPKQVEVTDAAILALIENYCREAGVRNLQKHIEKIYRKIALQLVRQGEMIDATVEPIKENIDSDEFGQNTVQNKNSELVEGSDPEKEGETSDKVDKVQTDLSSDESQCLEVAKESEEDKEIKTKTIEKVLVDESNLTDFVGKPVFHAERIYDQTPVGVVMGLAWTAMGGSTLYIETTLVEEGEGKGTLHPTGQLGDVMKESAQIAHTVARAILLEKEPENPFFANSKLHLHVPAGATPKDGPSAGCTMTTSLLSLAMKKPVKKDLAMTGEVTLTGKILPIGGVKEKTIAARRSEVKTIIFPSANRRDFDELAPNVKEGLDVHFVDDYMQIFNLALGDDQSQNIERVINVL*






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