SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g095300

Feature Type:gene_model
Chromosome:Gm20
Start:33832410
stop:33834672
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g095300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17760.1AT damaged DNA binding;exodeoxyribonuclease IIIs JGI N/AIEA
GO:0000077GO-bp DNA damage checkpoint EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0030896GO-cc checkpoint clamp complex EnsemblGenomesN/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
KOG3194 KOG Checkpoint 9-1-1 complex, RAD1 component JGI N/AIEA
PTHR10870Panther CELL CYCLE CHECKPOINT PROTEIN RAD1 JGI N/AIEA
PF02144PFAM Repair protein Rad1/Rec1/Rad17 JGI N/AIEA

Expression Patterns of Glyma.20g095300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g095300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g22790 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g095300
>Glyma.20g095300.2 sequence-type=transcript locus=Glyma.20g095300 ID=Glyma.20g095300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTACCAGTGAGTGGAGTTTGTAGACAGTAGTAGAAAGGGAAAGAGGGTTGATAGAAGAGAAGGGTTTAGGATTTTGCACAACTCACTCATGGAGGAGGAAGAAGCCCCAGACGTTATATGCGAGCTGGAAAACGTTCAAGGCTTAGTGGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGTTGTCCGAACACGGCATTGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGTTATTCATTCGTTACGATTACAACGCACGAGGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTAGATTGCTTGAACGCCTTCTCGGTTCCTGCTGGTCAATCAATATCAAGCCTTGTTCAGATTCAATATCCGGGTCCTGACATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGGCAAACCCTTTAACCTTTACTGTTAAATCTGCAGCTCTGAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCAAGATTACTCTAGAGCCAGATCCTCCTTCTGTTTCATTAAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGAACTCCTGGTGGCATTTCAGTGTGATCATCAAGCTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATGCCTAGCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTCCAGCATCTGGTTTCAATTGCCAAACCATCTGTGTCACACCCATATGCTGATTCGGTTGGCTATCAGCAACCAAGTAGAATAGCTCATATTGAATTCTTTGTGAAACCAGAGGAAAGTGAGGACTGAGTGAATGATTATTAGTTACTATAAAGACTCCGTCAAGTTTTGCTATGCAAACCATTAACTTCGCAAAAGAATTACAAAATGGTTTGTATTCAGAATGTTGATCAAAGAGGTATTTTGCAGAAAAATCCTCGTTTAATCTGAGTTTTAGACGGAACAAGCTTGGTAAGGCCACTGAAACTTAAAACAGAATCGTAGCAATGTTGCTCAGATTTTGAAATTTTTGATGCATAGTTCAGGATTATTTTATCCCAATAACCCTTTTGACTTTTTTATCTGAATGATTA
Coding sequences of Glyma.20g095300
>Glyma.20g095300.1 sequence-type=CDS polypeptide=Glyma.20g095300.1.p locus=Glyma.20g095300 ID=Glyma.20g095300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGGAAGAAGCCCCAGACGTTATATGCGAGCTGGAAAACGTTCAAGGCTTAGTGGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGGACGCCGTGTTGGAGTTGTCCGAACACGGCATTGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGTTATTCATTCGTTACGATTACAACGCACGAGGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTAGATTGCTTGAACGCCTTCTCGGTTCCTGCTGGTCAATCAATATCAAGCCTTGTTCAGATTCAATATCCGGGTCCTGACATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGGCAAACCCTTTAACCTTTACTGTTAAATCTGCAGCTCTGAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCAAGATTACTCTAGAGCCAGATCCTCCTTCTGTTTCATTAAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGAACTCCTGGTGGCATTTCAGTGTGATCATCAAGCTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATGCCTAGCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTCCAGCATCTGGTTTCAATTGCCAAACCATCTGTGTCACACCCATATGCTGATTCGGTTGGCTATCAGCAACCAAGTAGAATAGCTCATATTGAATTCTTTGTGAAACCAGAGGAAAGTGAGGACTGA

>Glyma.20g095300.2 sequence-type=CDS polypeptide=Glyma.20g095300.2.p locus=Glyma.20g095300 ID=Glyma.20g095300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGGAAGAAGCCCCAGACGTTATATGCGAGCTGGAAAACGTTCAAGGCTTAGTGGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGTTGTCCGAACACGGCATTGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGTTATTCATTCGTTACGATTACAACGCACGAGGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTAGATTGCTTGAACGCCTTCTCGGTTCCTGCTGGTCAATCAATATCAAGCCTTGTTCAGATTCAATATCCGGGTCCTGACATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGGCAAACCCTTTAACCTTTACTGTTAAATCTGCAGCTCTGAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCAAGATTACTCTAGAGCCAGATCCTCCTTCTGTTTCATTAAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGAACTCCTGGTGGCATTTCAGTGTGATCATCAAGCTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATGCCTAGCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTCCAGCATCTGGTTTCAATTGCCAAACCATCTGTGTCACACCCATATGCTGATTCGGTTGGCTATCAGCAACCAAGTAGAATAGCTCATATTGAATTCTTTGTGAAACCAGAGGAAAGTGAGGACTGA
Predicted protein sequences of Glyma.20g095300
>Glyma.20g095300.1.p sequence-type=predicted peptide transcript=Glyma.20g095300.1 locus=Glyma.20g095300 ID=Glyma.20g095300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEEEAPDVICELENVQGLVDALTAVRWKRQQDAVLELSEHGIVLIVEESGCLQAKVYLKRELFIRYDYNARGGRPRFGVSLGHFVDCLNAFSVPAGQSISSLVQIQYPGPDMQLLLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAALKEAIEDLEWPGSSIKITLEPDPPSVSLRAEGHGDLQIDFMYYVNSELLVAFQCDHQASFKYKYKFLRATTSNMPSSVIKENRGSKLSIGRGGMLKVQHLVSIAKPSVSHPYADSVGYQQPSRIAHIEFFVKPEESED*

>Glyma.20g095300.2.p sequence-type=predicted peptide transcript=Glyma.20g095300.2 locus=Glyma.20g095300 ID=Glyma.20g095300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEEEAPDVICELENVQGLVDALTAVRWKRQQLSEHGIVLIVEESGCLQAKVYLKRELFIRYDYNARGGRPRFGVSLGHFVDCLNAFSVPAGQSISSLVQIQYPGPDMQLLLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAALKEAIEDLEWPGSSIKITLEPDPPSVSLRAEGHGDLQIDFMYYVNSELLVAFQCDHQASFKYKYKFLRATTSNMPSSVIKENRGSKLSIGRGGMLKVQHLVSIAKPSVSHPYADSVGYQQPSRIAHIEFFVKPEESED*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo