Glyma.20g090900

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Report for Sequence Feature Glyma.20g090900

Feature Type:	gene_model
Chromosome:	Gm20
Start:	33423759
stop:	33425018
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g090900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11910.1	AT	aspartic proteinase A1	JGI	N/A	IEA
AT1G62290.1	AT	Saposin-like aspartyl protease family protein	JGI	N/A	IEA
GO:0006508	GO-bp	proteolysis	EnsemblGenomes	N/A	IEA
GO:0006508	GO-bp	proteolysis	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	JGI	N/A	IEA
GO:0004190	GO-mf	aspartic-type endopeptidase activity	EnsemblGenomes	N/A	IEA
GO:0004190	GO-mf	aspartic-type endopeptidase activity	JGI	N/A	IEA
GO:0008233	GO-mf	peptidase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
PTHR13683	Panther	ASPARTYL PROTEASES	JGI	N/A	IEA
PTHR13683:SF85	Panther		JGI	N/A	IEA
PF00026	PFAM	Eukaryotic aspartyl protease	JGI	N/A	IEA
PF05184	PFAM	Saposin-like type B, region 1	JGI	N/A	IEA

Expression Patterns of Glyma.20g090900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g090900 not represented in the dataset	Glyma.20g090900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.20g090900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g22255	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g090900

Limit To All Plant Sequences

>Glyma.20g090900.2 sequence-type=transcript locus=Glyma.20g090900 ID=Glyma.20g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATGATGTATGCTCACAGGTTGGCTTATGTTTCAAAAGGACTAAATCAGAGAGCAATGGAATTGAGATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAACTGAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTCGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCGAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCAAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCACACTCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTTTCATTTTTCTCATAGTACAGAACAGCGCATGAAAGGAATTAACCAATG

>Glyma.20g090900.3 sequence-type=transcript locus=Glyma.20g090900 ID=Glyma.20g090900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTACGACCTGATGATGTATGCTCACAGGTTGGCTTATGTTTCAAAAGGACTAAATCAGAGAGCAATGGAATTGAGATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAACTGAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTCGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCGAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCAAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCACACTCCTGAGCAGGTTAGGTATTGAAAATTTTAATAAATTAAATGAAGTTTTGGTGGATGATTATACTCCATATATTTACTGTGGGCGTCAAAAGAACATTGGGGTCAGTAAGTAGTGAATATTTTTGCTTTTG

Coding sequences of Glyma.20g090900

Limit To All Plant Sequences

>Glyma.20g090900.1 sequence-type=CDS polypeptide=Glyma.20g090900.1.p locus=Glyma.20g090900 ID=Glyma.20g090900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGTGCAGCAATGGAATTGAGATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAACTGAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTCGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCGAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCAAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCACACTCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTTTCATTTTTCTCATAGTACAGAACAGCGCATGA

>Glyma.20g090900.2 sequence-type=CDS polypeptide=Glyma.20g090900.2.p locus=Glyma.20g090900 ID=Glyma.20g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAACTGAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTCGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCGAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCAAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCACACTCCTGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTTTCATTTTTCTCATAGTACAGAACAGCGCATGA

>Glyma.20g090900.3 sequence-type=CDS polypeptide=Glyma.20g090900.3.p locus=Glyma.20g090900 ID=Glyma.20g090900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGACCGAAAAGGAACAGAGAGAGTTGTCAACTGAAGATACTGCTTTGTGCACTTCCTGTCAGATGCTCGTGGTTTGGATTCAGAATCAACTAAAACAAAAGAAGACCAAGGAGATAGTATTCAACTATGTAAATCAGCTGTGCGAGAGCTTGCCGAGTCCAAATGGAGAGTCAGTAGTAGACTGTAATAGCATTTATGGATTGCCAAACATCACGTTTACTGTTGGAGACAAACCTTTCACCCACACTCCTGAGCAGGTTAGGTATTGA

Predicted protein sequences of Glyma.20g090900

Limit To All Plant Sequences

>Glyma.20g090900.1.p sequence-type=predicted peptide transcript=Glyma.20g090900.1 locus=Glyma.20g090900 ID=Glyma.20g090900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLCSNGIEMVTEKEQRELSTEDTALCTSCQMLVVWIQNQLKQKKTKEIVFNYVNQLCESLPSPNGESVVDCNSIYGLPNITFTVGDKPFTHTPEQYILKTGEGIAEVCLSGFIAFDIPFIFLIVQNSA*

>Glyma.20g090900.2.p sequence-type=predicted peptide transcript=Glyma.20g090900.2 locus=Glyma.20g090900 ID=Glyma.20g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVTEKEQRELSTEDTALCTSCQMLVVWIQNQLKQKKTKEIVFNYVNQLCESLPSPNGESVVDCNSIYGLPNITFTVGDKPFTHTPEQYILKTGEGIAEVCLSGFIAFDIPFIFLIVQNSA*

>Glyma.20g090900.3.p sequence-type=predicted peptide transcript=Glyma.20g090900.3 locus=Glyma.20g090900 ID=Glyma.20g090900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVTEKEQRELSTEDTALCTSCQMLVVWIQNQLKQKKTKEIVFNYVNQLCESLPSPNGESVVDCNSIYGLPNITFTVGDKPFTHTPEQVRY*

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