Glyma.20g088600

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g088600

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32984474
stop:	32989941
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g088600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14410.1	AT	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	JGI	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	JGI	N/A	IEA
PTHR23042	Panther	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	JGI	N/A	IEA
PTHR23042:SF20	Panther		JGI	N/A	IEA
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI	N/A	IEA

Expression Patterns of Glyma.20g088600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g088600

Paralog	Evidence	Comments
Glyma.10g007300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g088600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g22010	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g088600

Limit To All Plant Sequences

>Glyma.20g088600.2 sequence-type=transcript locus=Glyma.20g088600 ID=Glyma.20g088600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATTTGAAGGTTGTGTTATTCTGAAAGAGAAGATAGGGAGGGCGGTTTGGTTTGGTGCAAATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATAACAATAATAGGTTATTTATTCTCAAtttttaattgttattttttttcttttttgattacatgtttcttctttctGGGTTTCATTGTTGATCTTTGTGGTATTGATTTGCTGATATATGGTGAAAAACAAGACAACCCTTTTGATATGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCAAGAGAACACCAAGAAGAGGGGACGCACCGATTCATGCTTCAAGGCGGGATCAAAAGCTTGCCGTGAAAAATTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCCCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTACGCGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTGCCCGTTGCACCAGCAGGGTTTATGGCTCCACCTGTAGCTGCTGCTGCTGCAGCATATCAAGCAGGGGTGAACAAGATGGCCGTATATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCACATGATCATGAGCTCAGGCCTCCAGCTGCATAGTTGTTTCTATTATTGTTGCACTTTGGATAATTATTTAACATTTGCGAAGTATTGACATGTAAATATTGTCATCGTTTCGATTATTTATTTTTATTTTTTACTTAGTATAATGTGCTAAAAATAGGTTTTCAAGTAATCTATGATGGCAATGACATGAAAACTCTGTCGATGTACATTGCAAATTGCCCAGTTCTTCACTTCTTAGTAGCTCGCTAAATTCAATACTAAATTTATTGAAAGTTTTATTTTATGAGAAAATCTAAGGTGACGCTACCTGGCATGTT

Coding sequences of Glyma.20g088600

Limit To All Plant Sequences

>Glyma.20g088600.1 sequence-type=CDS polypeptide=Glyma.20g088600.1.p locus=Glyma.20g088600 ID=Glyma.20g088600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATAACAATAATAGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCAAGAGAACACCAAGAAGAGGGGACGCACCGATTCATGCTTCAAGGCGGGATCAAAAGCTTGCCGTGAAAAATTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCCCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTACGCGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTGCCCGTTGCACCAGCAGGGTTTATGGCTCCACCTGTAGCTGCTGCTGCTGCAGCATATCAAGCAGGGGTGAACAAGATGGCCGTATATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCACATGATCATGAGCTCAGGCCTCCAGCTGCATAG

>Glyma.20g088600.2 sequence-type=CDS polypeptide=Glyma.20g088600.2.p locus=Glyma.20g088600 ID=Glyma.20g088600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAAAACAAGACAACCCTTTTGATATGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCAAGAGAACACCAAGAAGAGGGGACGCACCGATTCATGCTTCAAGGCGGGATCAAAAGCTTGCCGTGAAAAATTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCTCTGTTTTGGAGCCAGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACCGAAGCCCAGGAGCTCAAAAAAACAAATGAAAAATTACTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTACGCGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAAAGGATTGAGAAGCAGTTGAAGGCCTTGCCCGTTGCACCAGCAGGGTTTATGGCTCCACCTGTAGCTGCTGCTGCTGCAGCATATCAAGCAGGGGTGAACAAGATGGCCGTATATCCAAACTATGGCTACATCCCAATGTGGCAATATCTTCCTCAATCTGTCAGAGACACATCACATGATCATGAGCTCAGGCCTCCAGCTGCATAG

Predicted protein sequences of Glyma.20g088600

Limit To All Plant Sequences

>Glyma.20g088600.1.p sequence-type=predicted peptide transcript=Glyma.20g088600.1 locus=Glyma.20g088600 ID=Glyma.20g088600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSLEDSGCWDFLDYSFIDQAPPDFLWSNNNNSVSTEIDIPGDAVACQENTKKRGRTDSCFKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGFMAPPVAAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA*

>Glyma.20g088600.2.p sequence-type=predicted peptide transcript=Glyma.20g088600.2 locus=Glyma.20g088600 ID=Glyma.20g088600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKNKTTLLICVSTEIDIPGDAVACQENTKKRGRTDSCFKAGSKACREKLRRERLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKKTNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKALPVAPAGFMAPPVAAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSVRDTSHDHELRPPAA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain