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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33340.1 | AT | MOS4-associated complex 3B | JGI | N/A | IEA |
| GO:0000349 | GO-bp | generation of catalytic spliceosome for first transesterification step | EnsemblGenomes | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0000974 | GO-cc | Prp19 complex | EnsemblGenomes | N/A | IEA |
| GO:0071006 | GO-cc | U2-type catalytic step 1 spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0061630 | GO-mf | ubiquitin protein ligase activity | EnsemblGenomes | N/A | IEA |
| KOG0289 | KOG | mRNA splicing factor | JGI | N/A | IEA |
| PTHR13889 | Panther | PRE-MRNA SPLICING FACTOR PRP19-RELATED | JGI | N/A | IEA |
| PTHR13889:SF9 | Panther | JGI | N/A | IEA | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | N/A | IEA |
| PF08606 | PFAM | Prp19/Pso4-like | JGI | N/A | IEA |
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Glyma.20g084500 not represented in the dataset |
Glyma.20g084500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g133700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g21330 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g084500.1 sequence-type=CDS polypeptide=Glyma.20g084500.1.p locus=Glyma.20g084500 ID=Glyma.20g084500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTCGTGTCTCGGAACTCCGGTCTCCTCTTCGAGAAGCGTTTGATTGAGCGACACATTTCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGACGACATTGTACCAATCAAGACAGGCAAGATAGTGAAACCCAGACCTGTTCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGACAAGAGCTGAGTCATGCTTTGTATCAGCATGATGCTGCTTGCCGAGTTATTGCAAGACTAAAAAAGGAACGAGATGAAGCTAGGTCCTTACTTGCACAAGCAGAGAGGCAGTTCCCTGTTTCTGCACCAAATGCCATAACAGCAAATGCCCCCGTCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACTGATTGCAATGCTGCTCTTTCCCAGCAGAGAAAGAAGCGACAGATTCCTCCAACTTTGGCTCCTGTCGAAGCTCTAGAGGCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCTCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGCCCATCAGGACAGATATTATCTACACTCAGTGGTCACTCTAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCATTCCTAACTGCTTCAGCAGATAAGACAGTTCGTCTATGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATTCAGCTGAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTACTTTGTGACTGCTTCACTTGATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACGTGTTTGACTCAGGTTTATGACACTTCAGGTTCTTCGGAAGGGTACACATCTGCGGCTTTTCATCCGGATGGTCTCATTCTTGGAACCGGCACCACAGAATCTCTTGTCAAGATTTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGTGGAGTTCGACCACAGTGGGTCCTACCTAGCAGTTGCTGGTTCTGATATAAGGATTTACCAAGTAGCAAATGTGAAATCTGAATGGAACTGTATCAAAACCTTCCCTGATTTATCTGGAACAGGGAAGAACACGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCTGTGGGATCAATGGACCGAAATCTTCGGATATTCGGCTTGCCCGGTGAAGATGCTCCTACTGAGTCATAA
>Glyma.20g084500.1.p sequence-type=predicted peptide transcript=Glyma.20g084500.1 locus=Glyma.20g084500 ID=Glyma.20g084500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAITANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSIISELTDCNAALSQQRKKRQIPPTLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGNYNCRHILKDHSAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYDTSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKNTCVKFGPDSKYIAVGSMDRNLRIFGLPGEDAPTES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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