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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19260.1 | AT | TTF-type zinc finger protein with HAT dimerisation domain | JGI | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0005654 | GO-cc | nucleoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000981 | GO-mf | RNA polymerase II transcription factor activity, sequence-specific DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | EnsemblGenomes | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | JGI | N/A | IEA |
| PTHR11697 | Panther | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN | JGI | N/A | IEA |
| PTHR11697:SF9 | Panther | JGI | N/A | IEA | |
| PF05699 | PFAM | hAT family C-terminal dimerisation region | JGI | N/A | IEA |
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Glyma.20g083200 not represented in the dataset |
Glyma.20g083200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g21171 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g083200.1 sequence-type=CDS polypeptide=Glyma.20g083200.1.p locus=Glyma.20g083200 ID=Glyma.20g083200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTAAAGTTGTTTGGTATCACAAACGAGCTTTCAAATATATTGCAAAGAAAAGATCTTAATATTGTGAATGCCATGGAATTAGTTGATGTTGTCAAAGCTCGGTTGGGCACAATGAGAGAGAGTGGCTGGAATAATTTTTTTGCCGATGTCCAAGGATTTTGTGTTGCTAAAAGTATTCTGGTACCAAATATGGATGACGAAATACCAGTTCGGGGTCGTTCAAGAGCAGAAGGGAGGACTATCACTAATCTTCATCATTACCGTGTAGAGATTTTTTATGTTGCTATTGATAAAATATGTGTGGAGATGGATCACCGCTTTAGTGAAGGAAGTAACATTATACTTGATTGCTTCTCATGTCTTGACCCCAAGAACTCTTTCTCCAAGTTTGATGTTGATAAGCTTGCTCGTCTTGCTGATATTTATCATGCAGACTTTTCTGATGATGACCGAGGAACAATTAGGGATCAACTTGAAACTTATGTGCTTCAAGTGAGAAGAAATGCTTCTTTTTCCACTTGTGAAGATGTTCAAAGTTTGGCTATGAAGATGGTTCAAACTGAGAAACATTTGGTATTTCCATTGGTTTATAAACTTATTGAGCTAGCTTTGATATTGCCGGTGTCGACAGCATCCGTTGAAAGAGCTTTTTCAGCAATGAAGATTATCAAGTCTAAATTGCGCAATAAGATCAACGATGTGTGGTTCAATGACTTGATGGTATGTTACACCGAGCGGGAGATATTCAAGTCACTTGATGATATTGATATTATTCGAACATTTACCGCAAAGAAGTCTCGGAAAGGACACTTGCCTCGTAATTTTATTTAA
>Glyma.20g083200.1.p sequence-type=predicted peptide transcript=Glyma.20g083200.1 locus=Glyma.20g083200 ID=Glyma.20g083200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLKLFGITNELSNILQRKDLNIVNAMELVDVVKARLGTMRESGWNNFFADVQGFCVAKSILVPNMDDEIPVRGRSRAEGRTITNLHHYRVEIFYVAIDKICVEMDHRFSEGSNIILDCFSCLDPKNSFSKFDVDKLARLADIYHADFSDDDRGTIRDQLETYVLQVRRNASFSTCEDVQSLAMKMVQTEKHLVFPLVYKLIELALILPVSTASVERAFSAMKIIKSKLRNKINDVWFNDLMVCYTEREIFKSLDDIDIIRTFTAKKSRKGHLPRNFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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