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Report for Sequence Feature Glyma.20g080200

Feature Type:gene_model
Chromosome:Gm20
Start:29937628
stop:29939451
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g080200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G05320.1AT beta-1,2-N-acetylglucosaminyltransferase II JGI N/AIEA
GO:0009312GO-bp oligosaccharide biosynthetic process EnsemblGenomesN/AIEA
GO:0009312GO-bp oligosaccharide biosynthetic process JGI N/AIEA
GO:0005795GO-cc Golgi stack EnsemblGenomesN/AIEA
GO:0005795GO-cc Golgi stack JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0008455GO-mf alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity EnsemblGenomesN/AIEA
GO:0008455GO-mf alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity JGI N/AIEA
KOG2791 KOG N-acetylglucosaminyltransferase JGI N/AIEA
PTHR12871Panther BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II JGI N/AIEA
PF05060PFAM N-acetylglucosaminyltransferase II (MGAT2) JGI N/AIEA

Expression Patterns of Glyma.20g080200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.20g080200
ParalogEvidenceComments
Glyma.10g128800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g080200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g20280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g080200
>Glyma.20g080200.1 sequence-type=CDS polypeptide=Glyma.20g080200.1.p locus=Glyma.20g080200 ID=Glyma.20g080200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTATCCAACTCTCGCGAAGGATCGTATTGTTGTAGTTTTGTATGTTCACAACCGGCCTCAGTATCTGAAAGTGGTTGTTGAGAGCCTTTCGCAGGTGGTGGGGATTAGTGAGACCTTGCTAATTGTTAGTCATGATGGGTACATTGAGGAGATGAACAAGATCATTGATGGTATCAAGTTTTGCCAAGTTAAACAGATCTATGCTACTTATTCGCCCCATCTGTTTTCTGATAGTTTTCCCGGGGTCTCAGCTAATGACTGCAAGGAGAAAGATGATGCTGGAGAAAAACATTGTGAGGGAAATCCTGATCAGTATGGAAACCACCGCTTGCCAAAGATTGTATCACTGAAGCATCATTGGTGGTGGATGATGAACACGGTATGGAATGGGTTGAGAGAGACAAGGGATCATTCTGGTCATATTCTTTTCATTGAAGAAGACCACTTTATATTTCCCAATGCGTATCGCAATCTACAGGTTCTAATTTCACTGAAGCCTAAAAAGTGTCCTGATTGTTATGCTGCTAATTTAGCACCTTCTGATGTGAACTCAAGAGGCGAAGGTTGGGCAACTTTGATTGCTGAGAGAATGGGGAATGTTGGTTACTCTTTCAATCGAACTGTTTGGAAGAAAATACACAATAAGGCGAGAGAGTTTTGTTTCTTTGATGACTATAATTGGGATATCACAATGTGGGCAACTGTTTATCCTTCATTTGGCAGTCCCGTTTACACGTTACGAGGTCCTAGGACCAGCGCCGTTCATTTTGGGAGATGTGGTTTGCATCAAGGTCAGGAGGAGAATAAGGCTTGCATTGATAATGGCATGGTGAACATTAATGTTGAAGAGCCTGATACAGTTTCTAACATTGAATTAAATTGGGAAGTTCACACCTATAAGAATCAGCCTGGTTATAAAGCAGGGTTTAAAGGTTGGGGAGGTTGGGGGGATAATAGAGATCGTCTCTTATGCTTGAGTTTTGCCAAAATGTACCACTCCACTGGCACAGCGTCTCCATTTCACTGCATGAGAAGGCGCTCATTTGTTATGCTACTGGAGAGTAACATTGTTGCATGCTTCTTTGTATCCTATCAGTGA
Predicted protein sequences of Glyma.20g080200
>Glyma.20g080200.1.p sequence-type=predicted peptide transcript=Glyma.20g080200.1 locus=Glyma.20g080200 ID=Glyma.20g080200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
LYPTLAKDRIVVVLYVHNRPQYLKVVVESLSQVVGISETLLIVSHDGYIEEMNKIIDGIKFCQVKQIYATYSPHLFSDSFPGVSANDCKEKDDAGEKHCEGNPDQYGNHRLPKIVSLKHHWWWMMNTVWNGLRETRDHSGHILFIEEDHFIFPNAYRNLQVLISLKPKKCPDCYAANLAPSDVNSRGEGWATLIAERMGNVGYSFNRTVWKKIHNKAREFCFFDDYNWDITMWATVYPSFGSPVYTLRGPRTSAVHFGRCGLHQGQEENKACIDNGMVNINVEEPDTVSNIELNWEVHTYKNQPGYKAGFKGWGGWGDNRDRLLCLSFAKMYHSTGTASPFHCMRRRSFVMLLESNIVACFFVSYQ*






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