Glyma.20g077400

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.20g077400): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.20g077400): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.20g077400

Feature Type:	gene_model
Chromosome:	Gm20
Start:	28029191
stop:	28042494
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g077400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13720.1	AT	Inosine triphosphate pyrophosphatase family protein	JGI	N/A	IEA
GO:0009117	GO-bp	nucleotide metabolic process	EnsemblGenomes	N/A	IEA
GO:0009143	GO-bp	nucleoside triphosphate catabolic process	EnsemblGenomes	N/A	IEA
GO:0009204	GO-bp	deoxyribonucleoside triphosphate catabolic process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0004551	GO-mf	nucleotide diphosphatase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	JGI	N/A	IEA
GO:0035529	GO-mf	NADH pyrophosphatase activity	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0047429	GO-mf	nucleoside-triphosphate diphosphatase activity	EnsemblGenomes	N/A	IEA
KOG3222	KOG	Inosine triphosphate pyrophosphatase	JGI	N/A	IEA
PTHR11067	Panther	INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN	JGI	N/A	IEA
PF01725	PFAM	Ham1 family	JGI	N/A	IEA
PWY-7184	SoyCyc9	pyrimidine deoxyribonucleotides de novo biosynthesis I	Plant Metabolic Network		ISS
PWY-7187	SoyCyc9	pyrimidine deoxyribonucleotides de novo biosynthesis II	Plant Metabolic Network		ISS
PWY-7206	SoyCyc9	pyrimidine deoxyribonucleotides dephosphorylation	Plant Metabolic Network		ISS
PWY-7211	SoyCyc9	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis	Plant Metabolic Network		ISS
PWY0-166	SoyCyc9	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	Plant Metabolic Network		ISS
GN7V-68461	SoyCyc9-rxn	nucleoside triphosphate pyrophosphohydrolase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.20g077400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g077400 not represented in the dataset	Glyma.20g077400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.20g077400

Paralog	Evidence	Comments
Glyma.10g125100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.20g077400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g19210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g077400

Limit To All Plant Sequences

>Glyma.20g077400.2 sequence-type=transcript locus=Glyma.20g077400 ID=Glyma.20g077400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gcttaCTGATTTTTGCACCTAAAGTGACTCAGTCCTTCATTCACTCTCTGAATCCTTCACTGACTAACCCAACAATGCCTCTGCGCCCTCACTGAGATCGTGCCCTTCATCAATCCCAAGCTGTCCCGCCGTCTCCTATATCGCTTCAACGTCATGTTCCTTTAACATTGTTGAAGTGCATCTTAATTCCTTAACTGGAGCTCAGCCCTAATTTAGAATCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGgtctcaACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGAAAGCTGAACGTGGTAGGTTATAGGCTACAAGCTCTTTATTAAAAGTCCCTTGAAATTAAACGGAAATTGTTTCTAGCAGTAACAATGTGGAAATTACTTTGAACTTAAATACTGCTTTTGTTTACAACTTCTCCAGCAAAAGAACAAAAACCAAACTTAGAAAAATATACCAAAGAAAAACTAATCTTAAAGATGTTTTGGTTTGAACAAAAATTGCTACGAGACTAAAAAATAGAGCTTAATCGATATACATTGTTGGTGTAAAGTCTTTTGCACTGTCAATTGATCACGAGATTTAATTTTTTTTTC

>Glyma.20g077400.3 sequence-type=transcript locus=Glyma.20g077400 ID=Glyma.20g077400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTATTGGCGAATGCATGTAGGAACTAAATTAGATTATTTACCCGTAAAATGTATCATACTCAAATAAAACTATCTGTAAAAATATAAAATAAACATATAGAACAAAAATAAATTAAAATTTAACCCAACACACGTTAATGTAATATGAGAAAAGGTTACAAAATATCAAATTTATACATTTACACATCACACAACACAGTGACGCCACCGTAGTGGGAAGCCATCGTTGTCTCGGCGAAGAATCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGgtctcaACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGAAAGCTGAACGTGGTAGGTTATAGGCTACAAGCTCTTTATTAAAAGTCCCTTGAAATTAAACGGAAATTGTTTCTAGCAGTAACAATGTGGAAATTACTTTGAACTTAAATACTGCTTTTGTTTACAACTTCTCCAGCAAAAGAACAAAAACCAAACTTAGAAAAATATACCAAAGAAAAACTAATCTTAAAGATGTTTTGGTTTGAACAAAAATTGCTACGAGACTAAAAAATAGAGCTTAATCGATATACATTGTTGGTGTAAAGTCTTTTGCACTGTCAATTGATCACGAGATTTAATTTTTTTTTC

>Glyma.20g077400.4 sequence-type=transcript locus=Glyma.20g077400 ID=Glyma.20g077400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTATTGGCGAATGCATGTAGGAACTAAATTAGATTATTTACCCGTAAAATGTATCATACTCAAATAAAACTATCTGTAAAAATATAAAATAAACATATAGAACAAAAATAAATTAAAATTTAACCCAACACACGTTAATGTAATATGAGAAAAGGTTACAAAATATCAAATTTATACATTTACACATCACACAACACAGTGACGCCACCGTAGTGGGAAGCCATCGTTGTCTCGGCGAATCCTACAAGATTTGGGAAATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGgtctcaACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGAAAGCTGAACGTGGTAGGTTATAGGCTACAAGCTCTTTATTAAAAGTCCCTTGAAATTAAACGGAAATTGTTTCTAGCAGTAACAATGTGGAAATTACTTTGAACTTAAATACTGCTTTTGTTTACAACTTCTCCAGCAAAAGAACAAAAACCAAACTTAGAAAAATATACCAAAGAAAAACTAATCTTAAAGATGTTTTGGTTTGAACAAAAATTGCTACGAGACTAAAAAATAGAGCTTAATCGATATACATTGTTGGTGTAAAGTCTTTTGCACTGTCAATTGATCACGAGATTTAATTTTTTTTTC

Coding sequences of Glyma.20g077400

Limit To All Plant Sequences

>Glyma.20g077400.1 sequence-type=CDS polypeptide=Glyma.20g077400.1.p locus=Glyma.20g077400 ID=Glyma.20g077400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGA

>Glyma.20g077400.2 sequence-type=CDS polypeptide=Glyma.20g077400.2.p locus=Glyma.20g077400 ID=Glyma.20g077400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGA

>Glyma.20g077400.3 sequence-type=CDS polypeptide=Glyma.20g077400.3.p locus=Glyma.20g077400 ID=Glyma.20g077400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGA

>Glyma.20g077400.4 sequence-type=CDS polypeptide=Glyma.20g077400.4.p locus=Glyma.20g077400 ID=Glyma.20g077400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCACGAGGGTTGGTACTGTCACGTCCTGTTACTTTTGTAACTGCCAATGCCAAAAAGCTTGAAGAAGTTCGTGCCATCTTGGGCAATTCCATTCCTTTTCAGTCCCTCAAACTTGACTTGCCAGAGTTGCAAGGAGAACCTGAAGATATCTCCAAAGAGAAGGCTCGAATTGCTGCTCTTCAGGTGAATGGACCTGTGTTGGTTGAAGACACTTGCCTCTGTTTCAATGCCTTGAAGGGTCTTCCAGGGCCTTACATCAAATGGTTTCTGCAGAAGCTTGGTCATGAAGGTCTCAACAATTTGCTGATGGCATATGATGATAAATCAGCGTATGCCTTATGTGTATTTTCCTTTGCTGCTGGTCCAGACAGTGAACCTATCACATTTTCTGGAAAAACTCCGGGAAAGATTGTTCCTCCAAGAGGGCCTAATGATTTTGGATGGGATCCTATTTTTGAACCTGATGGCTATGACCAAACGTATGCTCAGATGCCCAAAGAAGAAAAGAACAAAATTTCCCACCGCTCCAAATCTCTTGCATTGGTGAAATCTCATTTTGCTGAAGCTAGATTTACTTTTGACGTCAAGAACTTCTGA

Predicted protein sequences of Glyma.20g077400

Limit To All Plant Sequences

>Glyma.20g077400.1.p sequence-type=predicted peptide transcript=Glyma.20g077400.1 locus=Glyma.20g077400 ID=Glyma.20g077400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTANAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARIAALQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGPDSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEARFTFDVKNF*

>Glyma.20g077400.2.p sequence-type=predicted peptide transcript=Glyma.20g077400.2 locus=Glyma.20g077400 ID=Glyma.20g077400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTANAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARIAALQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGPDSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEARFTFDVKNF*

>Glyma.20g077400.3.p sequence-type=predicted peptide transcript=Glyma.20g077400.3 locus=Glyma.20g077400 ID=Glyma.20g077400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTANAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARIAALQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGPDSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEARFTFDVKNF*

>Glyma.20g077400.4.p sequence-type=predicted peptide transcript=Glyma.20g077400.4 locus=Glyma.20g077400 ID=Glyma.20g077400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAARGLVLSRPVTFVTANAKKLEEVRAILGNSIPFQSLKLDLPELQGEPEDISKEKARIAALQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYDDKSAYALCVFSFAAGPDSEPITFSGKTPGKIVPPRGPNDFGWDPIFEPDGYDQTYAQMPKEEKNKISHRSKSLALVKSHFAEARFTFDVKNF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain