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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16740.1 | AT | terpene synthase 03 | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0010333 | GO-mf | terpene synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0010333 | GO-mf | terpene synthase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PF01397 | PFAM | Terpene synthase, N-terminal domain | JGI | N/A | IEA |
| PF03936 | PFAM | Terpene synthase family, metal binding domain | JGI | N/A | IEA |
| GN7V-61754 | SoyCyc9-rxn | isoprene synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| TPS23 | terpene synthase 23 |
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Glyma.20g074400 not represented in the dataset |
Glyma.20g074400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g18280 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g074400.1 sequence-type=CDS polypeptide=Glyma.20g074400.1.p locus=Glyma.20g074400 ID=Glyma.20g074400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCACCAACCTAATTTTATGCTTGTCTAGATATAATCAATTTTTGTCCCCCACACCAACACTAATTAGTAGTACTAGATTTCCACAAAGTAAGAACTTCCCGCAAAAAACATCTCTTGCCAATCTCAAACCTCAGCGACTTATTTGTGCAGTGAGCTCTCAGTTTACCCAAATAACAGACGATGATAGTCGACGTTCAGCTAATTACCAACCAAACCTCTGGAATTTTGAATTTCTGCCGCCGTCTCTGGAAAATGACCATAAGGTGGAAAAACTGGAAGAGAGAGCAAAAAAGGTGGAGGAGGAGGTGCGTAAGGTGATCAACGGAATAGACACAAAACCACTATTACTGGAATTGATTGATGATGTCCAGCACCTGGGATTGACGTACAAGTTTGAGAAGGACATAATCAAAGCCCTTGAGAAGATTGTTTCCTTGGATGAGAATGAGGAACACAAAAGTGAGCTTTATTATACTGCTCTTAGCTTCCGTTTACTTAGACAACATGGCTTTGAGGTCTCCCAAGATGTATTTAAGAGATTCAAGGACAAGGAAGGAGGTTTCAGTGGTGAACTTAAAGGTGATGTGCAAGGGTTGCTGAGTCTATATGAAGCATCCTACCTTGGCTTTGAGGGAGACAATCTCTTGGACGAGGCAAGGGCCTTTTCAACAACACATCTCAAGAACAATCTAAAACAAGGAATAAACACCAAAGAGGCAGAACAAGTTAATCATGCACTGGAACTTCCCTATCACAGAAGATTGCAAAGACTGGAAGCACGATGGTACCTTGAAAAATATGAACCAAAGGAACCCCACCATCAGTTACTTCTCGAACTTGCAAAGCTAGATTTCAATATGGTGCAATTATTGCACCAGAAAGAGCTGCAAGAACTGTCAAGATGGTGGAGTGAGATGGGATTAGCAAGCAAGCTGGAGTTTGCCCGAGACAGATTAATGGAGGTGTATTTCTGGGCACTCGGAATGGCACCTGATCCTCAATTCAGAGAATGTCGTAAAGCTGTCACTAAAATGTTTGGACTAGTCACCATCATCGATGATGTGTATGACATCTATGGTACCTTGGACGAGCTACAACTCTTCACCGATGCTGTTGAGAGATGGGACGTGAATGTCGTAAATACACTACCAGACTACATGAAGTTGTGCTATTTAGCACTCTATAACACGGTCAATGACACAGCTTATAGCATCCTTAAAGAAAAGGGACGTAACAACCTTTCCTATTTGAAAAAATCTTGGTGTGAGTTGTGCAAAGCATTCCTCCAAGAAGCAAAATGGTCAAACAACAAAATTGTTCCGGCATTCAGCAAGTACCTAGAAAATGCATCGGTGTCCTCTTCCGGCGTGGCTTTGCTTGCTCCTTCCTATTTTTCAGTGTGCCAAGAACAGGACATCTCATTCTCAGACAAAACTCTTCATTATTTAACTAATTTCGGTGGCCTTGTGCGCTCTTCATGCACCATTTTCAGGCTTTGCAATGACCTAACTACCTCGGCGGCTGAGCTAGAGAGGGGTGAAACAACAAATTCAATAATGTCCTACATGCATGAGAATGGCACTTCTGAGGAGCATGCATGTGAGGAGTTGAGAAATTTGATCGACATAGAGTGGAAGAAGATGAACCGACAGCGAGTTTCGGATTCTACACTCCCAAAAGCTTTCAGGGAAATAGCTATGAACATGGCTCGGGTTTCCCATAACACGTACCAATATGGAGATGGACTTGGAAGGCCAGACTACAACATAGAGAACAGAATCAAGTTTCTACTGATAGACCCTGTTCCCATTAATTAA
>Glyma.20g074400.1.p sequence-type=predicted peptide transcript=Glyma.20g074400.1 locus=Glyma.20g074400 ID=Glyma.20g074400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATNLILCLSRYNQFLSPTPTLISSTRFPQSKNFPQKTSLANLKPQRLICAVSSQFTQITDDDSRRSANYQPNLWNFEFLPPSLENDHKVEKLEERAKKVEEEVRKVINGIDTKPLLLELIDDVQHLGLTYKFEKDIIKALEKIVSLDENEEHKSELYYTALSFRLLRQHGFEVSQDVFKRFKDKEGGFSGELKGDVQGLLSLYEASYLGFEGDNLLDEARAFSTTHLKNNLKQGINTKEAEQVNHALELPYHRRLQRLEARWYLEKYEPKEPHHQLLLELAKLDFNMVQLLHQKELQELSRWWSEMGLASKLEFARDRLMEVYFWALGMAPDPQFRECRKAVTKMFGLVTIIDDVYDIYGTLDELQLFTDAVERWDVNVVNTLPDYMKLCYLALYNTVNDTAYSILKEKGRNNLSYLKKSWCELCKAFLQEAKWSNNKIVPAFSKYLENASVSSSGVALLAPSYFSVCQEQDISFSDKTLHYLTNFGGLVRSSCTIFRLCNDLTTSAAELERGETTNSIMSYMHENGTSEEHACEELRNLIDIEWKKMNRQRVSDSTLPKAFREIAMNMARVSHNTYQYGDGLGRPDYNIENRIKFLLIDPVPIN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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