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Report for Sequence Feature Glyma.20g073400

Feature Type:gene_model
Chromosome:Gm20
Start:25895105
stop:25905271
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g073400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24320.1AT MUTL protein homolog 1 JGI N/AIEA
GO:0006298GO-bp mismatch repair EnsemblGenomesN/AIEA
GO:0006298GO-bp mismatch repair JGI N/AIEA
GO:0043570GO-bp maintenance of DNA repeat elements EnsemblGenomesN/AIEA
GO:0032300GO-cc mismatch repair complex EnsemblGenomesN/AIEA
GO:0000404GO-mf heteroduplex DNA loop binding EnsemblGenomesN/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008094GO-mf DNA-dependent ATPase activity EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding JGI N/AIEA
PTHR11361Panther DNA MISMATCH REPAIR MUTS RELATED PROTEINS JGI N/AIEA
PTHR11361:SF45Panther JGI N/AIEA
PF00488PFAM MutS domain V JGI N/AIEA
PF01541PFAM GIY-YIG catalytic domain JGI N/AIEA

Expression Patterns of Glyma.20g073400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g073400 not represented in the dataset
Glyma.20g073400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g073400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g17726 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g073400
>Glyma.20g073400.1 sequence-type=CDS polypeptide=Glyma.20g073400.1.p locus=Glyma.20g073400 ID=Glyma.20g073400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTTTGTAGAATAAAGAATGTACTTGATGAAATTTTGCTGATGAACAAAACCTCTGAGCTCAATGACATATTAAAACATTTAATTGACCCCACATGGGTGGCAACGGGGCTAGAAATTGACTTTGAAACCTTGGTTGCTGGATGTGAAGTTGCATCTACTAAGATTGGTGATATAATCTCTCTGGATGGTGGGAATGATCAGAAAATCAACTCTTTCTCTCTTATTCCTCATGAATTTTTTGAGGATATAGAGTCTAAATGGAAAGGCCGAATAAAAAGAATCCACATAGATGATGTATTTACTGCTGTGGAAAAAGCAGCTGAAGCCTTGCATATAGCAGTCACTGAAGATTTTGTTCCTATTCTTTCTAGAATAAAGGCTACTGTATCCCCACTTGGAGGTCCTAAGGGAGAGATATCTTATGCTCGGGAGCATGAGGCAGTTTGGTTCAAAGGCAAACGCTTTACTCCGAATTTGTGGGCTGGTAGCCCTGGAGAGGAACAAATTAAACAGCTTAGCCATGCTTTAGATTCTAAAGGAAAAAAGGCAGGGGAGGAATGGTTTACCACACTAAAGGTGGAGGCTGCATTAACAAGGTACCATGAAGCAAATGGCAAGGCAAAAGAAAGAGTTTTGGAAATTTTAAGGGGACTTGCTGCTGAATTGCAATACAATATAAACATCCTTGTCTTTTCTTCCACGTTGCTTGTTATTGCCAAAGCTTTATTTGCTCATGCAAGTGAAGGGAGAAGAAGGAGATGGGTCTTTCCCACACTTGTAGAATCCCATGGGTTTGAGGATGTGAAGTCATTGAACAAAATCCATGGGATGAAGATAGTTGGTTTATTACCTTATTGGCTCCACGTAGCAGAAGGTGTTGTGCGTAACGATGTTGATATGCAATCATTATTTCTTTTGACAGGACCAAATGGTGGTGGGAAATCAAGTTTACTGCGGTCAATTTGTGCTGCTGCACTACTTGGAATTTGTGGACTCATGGTTCCTGCCGAATCAGCCCATATTCCTTATTTTGACTCCATCATGCTACATATGAATTCATATGATAGTCCAGCCGATAAAAAGAGTTCCTTTCAGGTGGAAATGTCAGAACTTCGATCCATCATTGGTGGAACCACCAAAAAGAGCCTTGTACTTATTGATGAAATTTGTCGAGGAACAGAAACAGCCAAGGGCACTTGTATTGCTGGTAGTATCATTGAAACTCTTGATAGAATTGGGTGTTTGGGTATCGTATCCACTCACTTACATGGAATATTTACTTTACCCCTAAACATAAACAACACTGTGCACAAAGCAATGGGCACAACATCCATTGATGGACAAACAATTCCTACCTGGAAGCTAACGGATGGAGTTTGTAGAGAAAGTCTTGCTTTTGAAACTGCCAGGAGAGAAGGAGTTCCTGAGCTTATTATCAGAAGAGCTGAATATATTTATCAGTCAGTTTATGCTAAGGAAAAGGAACTGCTTTCTGCAGAAAAATCCTCAAATGAAAAAAAGTATTCTACTTATATCAATGTCAGTAATTTGAATGGAACACATCTTCCTTCAAAGAGGTTCTTATCAGGAGCTAATCAAACGGAAGTTTTACGCGAGGAAGTTGAGAGTGCTGTCACTGTGATATGCCAGGACCACATAATGGAACAAAAAAGCAAAAACATTGCATTAGAGCTTACTGGGATAAAATGTCTCCAAATCAGGACAAGGGAGCAGCCACCTCCGTCAGTTGTAGGTTCTTCAAGTGTCTATGTGATGTTCAGACCAGATAAAAAACTCTATGTTGGAGAGACTGATGATCTTGAGGGTCGTGTCCGAGCACATCGATTGAAGGAAGGAATGCATGATGCATCGTTTCTTTATTTTCTTGTCCCTGGAAAAAGCTTGGCATGCCAATTAGAATCTTTGCTCATCAACCAGCTTTCTAGTCGAGGCTTCCAACTGACCAATACAGCTGATGGTAAACATAGGAATTTTGGCACTTCCAACCTGTATGCATAA
Predicted protein sequences of Glyma.20g073400
>Glyma.20g073400.1.p sequence-type=predicted peptide transcript=Glyma.20g073400.1 locus=Glyma.20g073400 ID=Glyma.20g073400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFCRIKNVLDEILLMNKTSELNDILKHLIDPTWVATGLEIDFETLVAGCEVASTKIGDIISLDGGNDQKINSFSLIPHEFFEDIESKWKGRIKRIHIDDVFTAVEKAAEALHIAVTEDFVPILSRIKATVSPLGGPKGEISYAREHEAVWFKGKRFTPNLWAGSPGEEQIKQLSHALDSKGKKAGEEWFTTLKVEAALTRYHEANGKAKERVLEILRGLAAELQYNINILVFSSTLLVIAKALFAHASEGRRRRWVFPTLVESHGFEDVKSLNKIHGMKIVGLLPYWLHVAEGVVRNDVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAHIPYFDSIMLHMNSYDSPADKKSSFQVEMSELRSIIGGTTKKSLVLIDEICRGTETAKGTCIAGSIIETLDRIGCLGIVSTHLHGIFTLPLNINNTVHKAMGTTSIDGQTIPTWKLTDGVCRESLAFETARREGVPELIIRRAEYIYQSVYAKEKELLSAEKSSNEKKYSTYINVSNLNGTHLPSKRFLSGANQTEVLREEVESAVTVICQDHIMEQKSKNIALELTGIKCLQIRTREQPPPSVVGSSSVYVMFRPDKKLYVGETDDLEGRVRAHRLKEGMHDASFLYFLVPGKSLACQLESLLINQLSSRGFQLTNTADGKHRNFGTSNLYA*






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