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Report for Sequence Feature Glyma.20g073000

Feature Type:gene_model
Chromosome:Gm20
Start:25759159
stop:25762441
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g073000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52490.1AT Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0019538GO-bp protein metabolic process EnsemblGenomesN/AIEA
GO:0019538GO-bp protein metabolic process JGI N/AIEA
KOG1051 KOG Chaperone HSP104 and related ATP-dependent Clp proteases JGI N/AIEA
PTHR11638Panther ATP-DEPENDENT CLP PROTEASE JGI N/AIEA
PTHR11638:SF2Panther JGI N/AIEA
PF02861PFAM Clp amino terminal domain JGI N/AIEA

Expression Patterns of Glyma.20g073000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g073000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g17560 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g073000
>Glyma.20g073000.1 sequence-type=CDS polypeptide=Glyma.20g073000.1.p locus=Glyma.20g073000 ID=Glyma.20g073000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGCAGGAGTTTGCAGCATACAGCTACAGGCTCTGACACCAGAGGCTGCAACCCTAGTTAAACAAGCTGTTACTCTTGCCACAAGAAGAGGTCATGCTCAAGTGACCCCTCTTCACATTGCCACTGTCATGCTTGCTACTTCCACAGGCCTTCTCCGCAAAGTTTTCCTTCAATGCCACTCTCACCCTCTCCAATACAAGGCACTAGAACTTTGCTTCAATGTTTCCCTCAACCGTTTGCCAGCACCCACACCAAGCCCTCTTCTGAGTCCTCCATATTCCACCACTCCCTCACTTTCCAATGCCTTGGTTGCAGCCTTCAAGCGTGCTCAGGCTCACCAACGCCGCGGTTCGATTGAGAACCAGCAGCAACCCATTCTGGCCTTGAAGATTGAGATGGAGCAGCTCATAGTCTCTATCCTTGATGACCCTAGCATTAGTAGGGTCATGAGAGAAGCTGGTTTCTCTAGTGCCCTTGTTAAAACAAGGGTTGAACAAGCTGTTTCAATGGAAGTTTGTTCACAGCACCAAGCTTCCAAGGAAAACACCACCACCAAGCTTCAAGTTCTTGGTGGTAGCAGCAGCATGTCCCCATCTAGATCTTTTGGTCAATTTGGGGCATCATTCAAGTCTATAGACCATGTTGGTGATCATGTAGATGATGTAACTAGTGTTTTGAGTGAACTTGTGAGCAAGAGGAGAAACACAGTCATTGTTGGGGAGAGTCTTGCTAGTGCTGAGGGAGTAGCTAGGGGAGTGATGGAAAGGTTAGAGACAGGGAGTGTTCAAGGAGAGTTGAGGTTTGTGCAATTTGTGAGTCTTCCTCTTGTCTCCTTTAGGAACATTAGCAAGGAGGAGGTTGAAAGGAAGCTTGTGGAGCTTAGAAACCTAGTAAAAAGTCATGTGGGGAGAGGGTTAATTCTATACTTGGGTGATCTGAAATGGTTGTTTGAGTTCTGGTCTAGTTATTGTGAGCAAAGAACAAACTATTACTGTTCTGTGGAGCATATGGTGATGGAGCTTAAAAAATTGATTAGTGGAAATAGGGAGAATAGTAGGTTGTGGCTTATGGGGATAGCAACTTTTAGAACATACATTAAGGGCAAAGCATGTCACCCCTCCCTTGAAACTATTTGGGATCTTCACCCCTTTACAGTTCCAGTTGGTAGCTTGAGCCTTGCTTTAAATTTTGATAGTGATTTTCATGTTCAGGAGAGAAGCAAGGTAACATTCAAGGACGAATCTTTTGAAGAACGAGCCAAAGTGCGCAAGTATCTAACTTGCTGCAGAGATTGCTCATTGAATTTTGAAAAAGAAGCTAAAAGCATTGCTAGTAGTTTTACTATAAGCAAGAGAGATTGCACCACTAGCTTGCCAACATGGCTCAAAAATTGCAAGGCAGAGAGAAGTCGCATGATGGAGGATCAGGAAAATGCTAAGCTTTGGGATATTTGCAAGAAATGGAACTCATTTTGCAGTTCAGCACATGGATTTCCGTCCAATCTTGAGAAACCATTTTTGTTCATTTCATCCTCTCCTTCATCCCCTACTTCAGTCTCTTCACATGAAAGAAAGCCTAGTTTAAATCTGAGCCACCTAAACTGGCCAGTCATTTCTGAACGAAAAGAAGTACCTAAAGAATGTGAGTTATACACTGAGACTACTGTTAGAAATGATTCCTATGAAGGAAACTTGATAATGTTCATGCCAGAGAGGAACCATCCTAAGCCAGACCTTTTATCAAATCCAAATTCTAGCCCCAATTCCGCTTCTTCAAGTGAGGCAGTGGAAGGTTTGGACAGCACTCAAATGTTCAAGGACCATAATGATGAAAATCTGAAGATTCTATGTGATGCATTGGAGAAAAAGGCTCCACAACAGAAAAAAACAGTGAAGGAGATTGCAAGCACTGTGCTTCTTTGCAGGTCAGGAATGAGAAAAGTAGGGAATCACTTAGTGAAGAGAGATGATAGGCAAGAAACTTGGTTTTTCTTTCTAGGTGTGGATTCTCAAGCAAAAGAAATGGTCTCAAAAGAGCTAGCTAAAGTAATTTTTGGCTCTTATAGTAACTTTGTCTCCATTGGTTTAAGCTGTTTCTCTTTAACTCATGAGGAGTCCAAAAATAAAAGGGCAAGAGATGAGTTTGGTGGCAGTTATCTTCAGAGATTTGGGGAAGCACTGAATGAGAATCCTCATAGGGTGTTCTTTATGGAAGATTTGGAGCAAGTTGATCACTTTTCTAAAAAGGGTGTTAAGCAAGGAATTGAAAGTGGAGCTATAACCCTTCCTGGTGGTGAATCTGTGCCTCTCAAGGATGCAATTGTCATTTTCAGTAGTGAATGCTTCAGTTCAGTACTGTCAAGAGCTTGTTCTCCTGCAAGAACTACTTCTCCATTTTCAGATGAAGACATGAAAGAGAATATTAACAACTCAGAGGAGAAAATTTCATGCCTCTCTTTGGATCTGAACATGGCCATTGAAGTTGATGTGCAAAAAAATGTGCATTTAGATGGAGAAACTGATGAGATCCTAGAGTTAGTTGATAAGAAAATTAATTTTAAAATATGA
Predicted protein sequences of Glyma.20g073000
>Glyma.20g073000.1.p sequence-type=predicted peptide transcript=Glyma.20g073000.1 locus=Glyma.20g073000 ID=Glyma.20g073000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRAGVCSIQLQALTPEAATLVKQAVTLATRRGHAQVTPLHIATVMLATSTGLLRKVFLQCHSHPLQYKALELCFNVSLNRLPAPTPSPLLSPPYSTTPSLSNALVAAFKRAQAHQRRGSIENQQQPILALKIEMEQLIVSILDDPSISRVMREAGFSSALVKTRVEQAVSMEVCSQHQASKENTTTKLQVLGGSSSMSPSRSFGQFGASFKSIDHVGDHVDDVTSVLSELVSKRRNTVIVGESLASAEGVARGVMERLETGSVQGELRFVQFVSLPLVSFRNISKEEVERKLVELRNLVKSHVGRGLILYLGDLKWLFEFWSSYCEQRTNYYCSVEHMVMELKKLISGNRENSRLWLMGIATFRTYIKGKACHPSLETIWDLHPFTVPVGSLSLALNFDSDFHVQERSKVTFKDESFEERAKVRKYLTCCRDCSLNFEKEAKSIASSFTISKRDCTTSLPTWLKNCKAERSRMMEDQENAKLWDICKKWNSFCSSAHGFPSNLEKPFLFISSSPSSPTSVSSHERKPSLNLSHLNWPVISERKEVPKECELYTETTVRNDSYEGNLIMFMPERNHPKPDLLSNPNSSPNSASSSEAVEGLDSTQMFKDHNDENLKILCDALEKKAPQQKKTVKEIASTVLLCRSGMRKVGNHLVKRDDRQETWFFFLGVDSQAKEMVSKELAKVIFGSYSNFVSIGLSCFSLTHEESKNKRARDEFGGSYLQRFGEALNENPHRVFFMEDLEQVDHFSKKGVKQGIESGAITLPGGESVPLKDAIVIFSSECFSSVLSRACSPARTTSPFSDEDMKENINNSEEKISCLSLDLNMAIEVDVQKNVHLDGETDEILELVDKKINFKI*






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