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Report for Sequence Feature Glyma.20g072400

Feature Type:gene_model
Chromosome:Gm20
Start:25658620
stop:25663533
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g072400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26230.1AT uricase / urate oxidase / nodulin 35, putative JGI N/AIEA
GO:0006144GO-bp purine nucleobase metabolic process EnsemblGenomesN/AIEA
GO:0019628GO-bp urate catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005777GO-cc peroxisome EnsemblGenomesN/AIEA
GO:0004846GO-mf urate oxidase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
KOG1599 KOG Uricase (urate oxidase) JGI N/AIEA
PTHR10395Panther URICASE AND TRANSTHYRETIN-RELATED JGI N/AIEA
PTHR10395:SF1Panther JGI N/AIEA
PF01014PFAM Uricase JGI N/AIEA
P165-PWYSoyCyc9 superpathway of purines degradation in plants Plant Metabolic Network ISS
PWY-5691SoyCyc9 urate conversion to allantoin I Plant Metabolic Network ISS
URSIN-PWYSoyCyc9 ureide biosynthesis Plant Metabolic Network ISS
GN7V-52222SoyCyc9-rxn factor-independent urate hydroxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g072400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g072400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g17440 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g072400
>Glyma.20g072400.2 sequence-type=transcript locus=Glyma.20g072400 ID=Glyma.20g072400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATGATCATTACTCATTACTCAATGAGTTTCACTGCTTGAATTTTTCTAATTTTCTGCAGAGAATCTGAACTCTGCATCTTGTTGTGCAAATGAAATCAGGTGTTTGGGTTTGTGAAGTATAGAATAGAATTTTGATTATTCAGGTTCTTCAAAGGGGCTGAATAGAATAGCCAGTGATTGGGAGACCCTTTTGATCTAAATGTGTGCTCCTTACTTGAGATCTATTTTGAATGGTTTATTCATATTAGTTGAATTTCAATATGGGGGTTTATTATGCTACTTGGGAATTGATTGGATTATAGTCAAACATGTTTTATTGCAAATGAGACTCACCTGGCtattcctgaagcattggtatttaaccatgccgaatgacgtggtgtggtccatgtagttgacctcacctagcgaaataaggctttgttgttgtttttattgAATGTTGGTACTCACCTGGCTAATCAAAATGCTTTTATTGTGCTTGTCTTTCATGTGGAACTTATGAATTTTCATGAAGTGGGTAAACTTTGACATATCAAAGGATGTAGTGCACCACTCAAGCGGAAATATCTGAAACTAATATGATATTTTCCTTGTGCCAAAGACATAGTAATAGGATTTAGTTTGAACTTTTCAGGGTTAGATCATATATATAAAAGTAAATCCTATTTTCTTGTTCTAGTACATGTTTCTGTGAAGTTGACTTTATCCAGAACAGGAAATGTTTGCCTGTGGTTGTGTGAAGGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAGAAACTGCAGAAGCTATGGTGCTCATCCCTTCTGTGGTGGATTGCCAGTGCAGCCTAAAATACCGAACCTGGCCTTAGAGATAGTGCTTTCCATTAATGTGTCTTGTAATTCTGGTTTTTGTCATCGTTGTATTTGTTTCGTGGAGAACTATTATGCATGAATAACTTCCAGGAGGGATATTCTGCAAGTTACACCAATGTTAAGTTTTTGATGTCCTAAATTCCAATAAATTCCTAGTGTCCTTATTATGGAAACTGAATTATGTCTTACTATGACGTTGATGCAATGCTTTTTTATGGTCATACTCATACATTATAGTCAAGA
Coding sequences of Glyma.20g072400
>Glyma.20g072400.1 sequence-type=CDS polypeptide=Glyma.20g072400.1.p locus=Glyma.20g072400 ID=Glyma.20g072400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCAGCAGGAAGTGGTAGAAGGGTTCAAGTTCGAACAGAGGCACGGGAAAGAGCGCGTGAGAGTGGCGCGCGTGTGGAAGACGAGGCAGGGGCAGCACTTCGTTGTGGAGTGGCGCGTGGGCATCACTCTCTTCTCAGACTGCGTCAACTCGTATCTCCGCGATGACAACTCTGACATCGTTGCTACTGATACCATGAAAAACACAGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAG

>Glyma.20g072400.2 sequence-type=CDS polypeptide=Glyma.20g072400.2.p locus=Glyma.20g072400 ID=Glyma.20g072400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGCCTGTGGTTGTGTGAAGGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAG
Predicted protein sequences of Glyma.20g072400
>Glyma.20g072400.1.p sequence-type=predicted peptide transcript=Glyma.20g072400.1 locus=Glyma.20g072400 ID=Glyma.20g072400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQQEVVEGFKFEQRHGKERVRVARVWKTRQGQHFVVEWRVGITLFSDCVNSYLRDDNSDIVATDTMKNTVYAKAKECSDILSAEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERILATEVTALWRYSYESQYSLPQKPFYFTEKYQEVKKVLADTFFGPPNGGVYSPSVQNTLYLMAKATLNRFPDIAYVSLKMPNLHFLPVNISNKDGPIVKFEDDVYLPTDEPHGSIQASLSRLWSKL*

>Glyma.20g072400.2.p sequence-type=predicted peptide transcript=Glyma.20g072400.2 locus=Glyma.20g072400 ID=Glyma.20g072400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFACGCVKVYAKAKECSDILSAEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERILATEVTALWRYSYESQYSLPQKPFYFTEKYQEVKKVLADTFFGPPNGGVYSPSVQNTLYLMAKATLNRFPDIAYVSLKMPNLHFLPVNISNKDGPIVKFEDDVYLPTDEPHGSIQASLSRLWSKL*






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