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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26230.1 | AT | uricase / urate oxidase / nodulin 35, putative | JGI | N/A | IEA |
| GO:0006144 | GO-bp | purine nucleobase metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019628 | GO-bp | urate catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005777 | GO-cc | peroxisome | EnsemblGenomes | N/A | IEA |
| GO:0004846 | GO-mf | urate oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| KOG1599 | KOG | Uricase (urate oxidase) | JGI | N/A | IEA |
| PTHR10395 | Panther | URICASE AND TRANSTHYRETIN-RELATED | JGI | N/A | IEA |
| PTHR10395:SF1 | Panther | JGI | N/A | IEA | |
| PF01014 | PFAM | Uricase | JGI | N/A | IEA |
| P165-PWY | SoyCyc9 | superpathway of purines degradation in plants | Plant Metabolic Network | ISS | |
| PWY-5691 | SoyCyc9 | urate conversion to allantoin I | Plant Metabolic Network | ISS | |
| URSIN-PWY | SoyCyc9 | ureide biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-52222 | SoyCyc9-rxn | factor-independent urate hydroxylase | Plant Metabolic Network | ISS |
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Glyma.20g072400 not represented in the dataset |
Glyma.20g072400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma20g17440 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.20g072400.2 sequence-type=transcript locus=Glyma.20g072400 ID=Glyma.20g072400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CATGATCATTACTCATTACTCAATGAGTTTCACTGCTTGAATTTTTCTAATTTTCTGCAGAGAATCTGAACTCTGCATCTTGTTGTGCAAATGAAATCAGGTGTTTGGGTTTGTGAAGTATAGAATAGAATTTTGATTATTCAGGTTCTTCAAAGGGGCTGAATAGAATAGCCAGTGATTGGGAGACCCTTTTGATCTAAATGTGTGCTCCTTACTTGAGATCTATTTTGAATGGTTTATTCATATTAGTTGAATTTCAATATGGGGGTTTATTATGCTACTTGGGAATTGATTGGATTATAGTCAAACATGTTTTATTGCAAATGAGACTCACCTGGCtattcctgaagcattggtatttaaccatgccgaatgacgtggtgtggtccatgtagttgacctcacctagcgaaataaggctttgttgttgtttttattgAATGTTGGTACTCACCTGGCTAATCAAAATGCTTTTATTGTGCTTGTCTTTCATGTGGAACTTATGAATTTTCATGAAGTGGGTAAACTTTGACATATCAAAGGATGTAGTGCACCACTCAAGCGGAAATATCTGAAACTAATATGATATTTTCCTTGTGCCAAAGACATAGTAATAGGATTTAGTTTGAACTTTTCAGGGTTAGATCATATATATAAAAGTAAATCCTATTTTCTTGTTCTAGTACATGTTTCTGTGAAGTTGACTTTATCCAGAACAGGAAATGTTTGCCTGTGGTTGTGTGAAGGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAGAAACTGCAGAAGCTATGGTGCTCATCCCTTCTGTGGTGGATTGCCAGTGCAGCCTAAAATACCGAACCTGGCCTTAGAGATAGTGCTTTCCATTAATGTGTCTTGTAATTCTGGTTTTTGTCATCGTTGTATTTGTTTCGTGGAGAACTATTATGCATGAATAACTTCCAGGAGGGATATTCTGCAAGTTACACCAATGTTAAGTTTTTGATGTCCTAAATTCCAATAAATTCCTAGTGTCCTTATTATGGAAACTGAATTATGTCTTACTATGACGTTGATGCAATGCTTTTTTATGGTCATACTCATACATTATAGTCAAGA
>Glyma.20g072400.1 sequence-type=CDS polypeptide=Glyma.20g072400.1.p locus=Glyma.20g072400 ID=Glyma.20g072400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTCAGCAGGAAGTGGTAGAAGGGTTCAAGTTCGAACAGAGGCACGGGAAAGAGCGCGTGAGAGTGGCGCGCGTGTGGAAGACGAGGCAGGGGCAGCACTTCGTTGTGGAGTGGCGCGTGGGCATCACTCTCTTCTCAGACTGCGTCAACTCGTATCTCCGCGATGACAACTCTGACATCGTTGCTACTGATACCATGAAAAACACAGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAG >Glyma.20g072400.2 sequence-type=CDS polypeptide=Glyma.20g072400.2.p locus=Glyma.20g072400 ID=Glyma.20g072400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTTGCCTGTGGTTGTGTGAAGGTGTATGCAAAAGCAAAGGAATGCTCAGACATACTCTCTGCTGAGGACTTTGCTATTTTGCTTGCTAAGCACTTTGTATCATTTTACAAGAAGGTTACTGGTGCTATTGTGAATATTGTGGAAAAACCATGGGAGCGTGTCATTGTGGATGGTCAACCTCATGAACATGGTTTCAAACTTGGGTCTGAGAAGCATACAACAGAGGCAATAGTACAAAAGTCTGGTTCACTTCAGTTGACTTCTGGTATTGAAGGATTGTCAGTGTTGAAGACAACCCAGTCTGGTTTTGTGAATTTCATAAGAGACAAGTACACAGCACTTCCTGATACCCGTGAAAGGATTCTGGCAACAGAAGTAACCGCACTGTGGAGGTATTCGTATGAATCACAGTATAGCCTCCCTCAGAAGCCATTTTACTTTACAGAAAAGTATCAGGAAGTGAAAAAAGTTCTGGCTGACACTTTTTTTGGCCCACCAAATGGGGGAGTCTATAGCCCATCTGTTCAAAACACACTCTACCTGATGGCAAAGGCCACACTGAACAGATTTCCTGACATAGCTTATGTCAGTCTAAAGATGCCAAATCTTCATTTCTTACCTGTCAATATCTCAAACAAGGATGGTCCTATTGTGAAGTTTGAGGATGATGTGTACTTGCCAACGGATGAGCCTCATGGGTCAATTCAAGCTAGCTTGAGCCGCCTTTGGTCAAAGCTGTAG
>Glyma.20g072400.1.p sequence-type=predicted peptide transcript=Glyma.20g072400.1 locus=Glyma.20g072400 ID=Glyma.20g072400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAQQEVVEGFKFEQRHGKERVRVARVWKTRQGQHFVVEWRVGITLFSDCVNSYLRDDNSDIVATDTMKNTVYAKAKECSDILSAEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERILATEVTALWRYSYESQYSLPQKPFYFTEKYQEVKKVLADTFFGPPNGGVYSPSVQNTLYLMAKATLNRFPDIAYVSLKMPNLHFLPVNISNKDGPIVKFEDDVYLPTDEPHGSIQASLSRLWSKL* >Glyma.20g072400.2.p sequence-type=predicted peptide transcript=Glyma.20g072400.2 locus=Glyma.20g072400 ID=Glyma.20g072400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFACGCVKVYAKAKECSDILSAEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDGQPHEHGFKLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFVNFIRDKYTALPDTRERILATEVTALWRYSYESQYSLPQKPFYFTEKYQEVKKVLADTFFGPPNGGVYSPSVQNTLYLMAKATLNRFPDIAYVSLKMPNLHFLPVNISNKDGPIVKFEDDVYLPTDEPHGSIQASLSRLWSKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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