SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.20g069300

Feature Type:gene_model
Chromosome:Gm20
Start:24544566
stop:24548044
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g069300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35160.1AT SU(VAR)3-9 homolog 5 JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0034968GO-bp histone lysine methylation EnsemblGenomesN/AIEA
GO:0034968GO-bp histone lysine methylation JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0018024GO-mf histone-lysine N-methyltransferase activity EnsemblGenomesN/AIEA
GO:0018024GO-mf histone-lysine N-methyltransferase activity JGI N/AIEA
GO:0042393GO-mf histone binding JGI N/AIEA
KOG1082 KOG Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing JGI N/AIEA
PTHR22884Panther SET DOMAIN PROTEINS JGI N/AIEA
PTHR22884:SF114Panther JGI N/AIEA
PF00856PFAM SET domain JGI N/AIEA
PF02182PFAM SAD/SRA domain JGI N/AIEA
PF05033PFAM Pre-SET motif JGI N/AIEA

Expression Patterns of Glyma.20g069300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g069300 not represented in the dataset
Glyma.20g069300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g069300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g16736 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g069300
>Glyma.20g069300.1 sequence-type=CDS polypeptide=Glyma.20g069300.1.p locus=Glyma.20g069300 ID=Glyma.20g069300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATAATTCAAAGTCTTCTGGGAGAAGGCATGAAGAATGGTCTCCTACCCCTTTGTCTGACAAGAAAAGGATGGAAGTGTCTGTAAAACACAGGAAGGTCAAACAAGCATTGGCGACGTTTAGAAACTTAGTTGACAAGCTCAATCATCAGTATAAAGCGTCTCAACCTGTGAATTTAATGGCGAAGACTAAAGCTATGATGGAAGCAGCAATGATGATGAGACAAAAGCATCAATGGGAGAACGATAAAAAGCATGTGGGACATGTAGTAGGCATCGAGGTAGGTGACATCTTTCAAAGTAGGGTGGAACTCAATGTCATTGGCCTCCATCGGCAGTTTTGGAATGGTATTGATTATATGGGAACAGGCAAGAACTCGTTGGCCACAAGCATTGTTGTAACCAATCGATACGATAATGCTAGGAAATCCAATGGTACCTTGGTTTACAGTGGTCATGGAGGAAATCCCAATGTTAAGAGTAATGTTTCTATTCAGGATCAGAAGTTGCAAGGGGGAAATTTGGCTCTGAAGAATAGCATGGATACAAAAAGTCCTGTGAGGGTTATACTGAAATTTTGTAAAAAGTTTGAAGTTGGCAGCAATTTCGATTACTTGTATGTTTATGATGGCTTGTATTTAGTGGATAAGATGACTGAAGAAAGAGGGAAACTTGGAAAACTTGTGTTCAAGTTTACACTGAATAGGATTTCAGAGCAACCCCAAAGTTGTGTTGCCCTCAAAGATGATGTTATGGGCAATGATGACAGTTCAAGACAACTTGCAAGTTCTAGGCCAAGAAACAGACACAAATCCAGAGGAAGTGTAGTCCAAAAGGATGTTGTTCGAGTTAACGATCTTTCAAAAGGAAAAGAAAAATTTCCTATTCGGGTGGTGACATTAACAAATTGTGTTCATATACCCAAATCCTTTTACTACATTGTTAAGAGCATCTATTCAGATAAGTTCAACCAGGCAACGATTCCGTGTGGCTGTGATTGTGAAGATGGATGTGTGAACTGTGACAAATGTGTTTGCATTATTAAGAATGGTGGGATAATGGCATATGATTGTAAAAAAAGACTTGCTTCTCCCATGGGATCATTGCTTATTTATGAATGTGGCCCTTCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAAGCCAGCATGGGATCCAGTTCCAACTGGAAATCTTCATGACAGAATTGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTACATTGGAGAAGTCCGGGACAGTAGACAAAGTGGATTGAGTATAGATGTTGATGATGACTATTTATTTCACACGGGTGTTGGAAAGGGCTTCATCGATGCAACAAAATGTGGAAACATTGGAAGATTTATAAATCATAGCTGTTCTCCGAATCTCCATGTCAAAGATGTTATGTATGATCATGATGACAAGAATCTTCCTCACAAAATGCTGTTTGCTGCAAAGGACATTCCTGCTGGTAGAGAGCTGAGTTTTGATTATAATTCCAAGGGAAAATTTATCAACGATAGGAGTAATAGCTGCTACTGTGGATCACAGGAATGCAATGGTCAGATCTATATTAAAGTTAAACAAAATGACAGGCTGACTGAGGAATTTGGAAGCTTCTAA
Predicted protein sequences of Glyma.20g069300
>Glyma.20g069300.1.p sequence-type=predicted peptide transcript=Glyma.20g069300.1 locus=Glyma.20g069300 ID=Glyma.20g069300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNSKSSGRRHEEWSPTPLSDKKRMEVSVKHRKVKQALATFRNLVDKLNHQYKASQPVNLMAKTKAMMEAAMMMRQKHQWENDKKHVGHVVGIEVGDIFQSRVELNVIGLHRQFWNGIDYMGTGKNSLATSIVVTNRYDNARKSNGTLVYSGHGGNPNVKSNVSIQDQKLQGGNLALKNSMDTKSPVRVILKFCKKFEVGSNFDYLYVYDGLYLVDKMTEERGKLGKLVFKFTLNRISEQPQSCVALKDDVMGNDDSSRQLASSRPRNRHKSRGSVVQKDVVRVNDLSKGKEKFPIRVVTLTNCVHIPKSFYYIVKSIYSDKFNQATIPCGCDCEDGCVNCDKCVCIIKNGGIMAYDCKKRLASPMGSLLIYECGPSCKCSSSCINRVSQHGIQFQLEIFMTELKGWGVRTRSFIPSGSFVCEYIGEVRDSRQSGLSIDVDDDYLFHTGVGKGFIDATKCGNIGRFINHSCSPNLHVKDVMYDHDDKNLPHKMLFAAKDIPAGRELSFDYNSKGKFINDRSNSCYCGSQECNGQIYIKVKQNDRLTEEFGSF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo