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Report for Sequence Feature Glyma.20g065500

Feature Type:gene_model
Chromosome:Gm20
Start:23250752
stop:23252090
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g065500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22275.1AT JGI N/AIEA
GO:0009611GO-bp response to wounding EnsemblGenomesN/AIEA
GO:0031347GO-bp regulation of defense response EnsemblGenomesN/AIEA
GO:1903507GO-bp negative regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:2000022GO-bp regulation of jasmonic acid mediated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003714GO-mf transcription corepressor activity EnsemblGenomesN/AIEA

Expression Patterns of Glyma.20g065500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g065500 not represented in the dataset
Glyma.20g065500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g065500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g16025 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.20g065500
>Glyma.20g065500.2 sequence-type=transcript locus=Glyma.20g065500 ID=Glyma.20g065500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTGTGTCTTTTTCTTTACTCACGTTCCACAAAATTTGTAATTTTTGCCATTGTAATTTCTTCCTATCGTTCGATCGATTCGGATCAATTACATACATAGCAAGTTAAAGGGGTGTCGTTGATTACAAAACTGGCATCATAATGAAGCGAAACTGCTACTTGGATCTTCGTTTTCGCCCTTCATCTGCTTCATCACCCCATGATTCTATCATGAGCAAAAAAGTTGTTGCCATTCCGCAAAGTAGACGCCACATGCTTGATGTCACAGAACTTCAGGCAAGAGTGATACTATGGTTGGCAAGTCAAGAAAGGGAAGGTAACACAGGACCAGCTTCGGCCACGTCGCTTTCATTGCAATCTCAAGCATTATTAATGCATGCCCCGCAAGGTTCTTCAGTAAAGAGATCCCTAAGGAATTTCCTTCAGAAGAGAAAGAAAAGGTTTCAAAAGTCACACCCCCATTGCTTCTCGCAATAGCACATCACAACTTATTCAAATCAAAAGAGTAAAAATTAAATTATTTTCGCATCAATCTTTATTACAATTCATTTTACTTACACCC
Coding sequences of Glyma.20g065500
>Glyma.20g065500.1 sequence-type=CDS polypeptide=Glyma.20g065500.1.p locus=Glyma.20g065500 ID=Glyma.20g065500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCGAAACTGCTACTTGGATCTTCGTTTTCGCCCTTCATCTGCTTCATCACCCCATGATTCTATTAAAAACAAACGAAGTTTATTTCTTGCATTTGTCGTTAGCATGAGCAAAAAAGTTGTTGCCATTCCGCAAAGTAGACGCCACATGCTTGATGTCACAGAACTTCAGGCAAGAGTGATACTATGGTTGGCAAGTCAAGAAAGGGAAGGTAACACAGGACCAGCTTCGGCCACGTCGCTTTCATTGCAATCTCAAGCATTATTAATGCATGCCCCGCAAGGTTCTTCAGTAAAGAGATCCCTAAGGAATTTCCTTCAGAAGAGAAAGAAAAGGTTTCAAAAGTCACACCCCCATTGCTTCTCGCAATAG

>Glyma.20g065500.2 sequence-type=CDS polypeptide=Glyma.20g065500.2.p locus=Glyma.20g065500 ID=Glyma.20g065500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCGAAACTGCTACTTGGATCTTCGTTTTCGCCCTTCATCTGCTTCATCACCCCATGATTCTATCATGAGCAAAAAAGTTGTTGCCATTCCGCAAAGTAGACGCCACATGCTTGATGTCACAGAACTTCAGGCAAGAGTGATACTATGGTTGGCAAGTCAAGAAAGGGAAGGTAACACAGGACCAGCTTCGGCCACGTCGCTTTCATTGCAATCTCAAGCATTATTAATGCATGCCCCGCAAGGTTCTTCAGTAAAGAGATCCCTAAGGAATTTCCTTCAGAAGAGAAAGAAAAGGTTTCAAAAGTCACACCCCCATTGCTTCTCGCAATAG
Predicted protein sequences of Glyma.20g065500
>Glyma.20g065500.1.p sequence-type=predicted peptide transcript=Glyma.20g065500.1 locus=Glyma.20g065500 ID=Glyma.20g065500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRNCYLDLRFRPSSASSPHDSIKNKRSLFLAFVVSMSKKVVAIPQSRRHMLDVTELQARVILWLASQEREGNTGPASATSLSLQSQALLMHAPQGSSVKRSLRNFLQKRKKRFQKSHPHCFSQ*

>Glyma.20g065500.2.p sequence-type=predicted peptide transcript=Glyma.20g065500.2 locus=Glyma.20g065500 ID=Glyma.20g065500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRNCYLDLRFRPSSASSPHDSIMSKKVVAIPQSRRHMLDVTELQARVILWLASQEREGNTGPASATSLSLQSQALLMHAPQGSSVKRSLRNFLQKRKKRFQKSHPHCFSQ*






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