Glyma.20g062200

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Report for Sequence Feature Glyma.20g062200

Feature Type:	gene_model
Chromosome:	Gm20
Start:	19517781
stop:	19521218
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.20g062200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07740.4	AT	homolog of yeast ADA2 2A	JGI	N/A	IEA
GO:0006357	GO-bp	regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0035065	GO-bp	regulation of histone acetylation	EnsemblGenomes	N/A	IEA
GO:1903508	GO-bp	positive regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:0003713	GO-mf	transcription coactivator activity	EnsemblGenomes	N/A	IEA
PTHR12374	Panther	TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED	JGI	N/A	IEA
PTHR12374:SF12	Panther		JGI	N/A	IEA

Expression Patterns of Glyma.20g062200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.20g062200 not represented in the dataset	Glyma.20g062200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.20g062200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma20g06645	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.20g062200

Limit To All Plant Sequences

>Glyma.20g062200.2 sequence-type=transcript locus=Glyma.20g062200 ID=Glyma.20g062200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGCTCAAGTCATACGATATTTAAATGTTTCATAGTTTCAAAGAAATAGTTTGTGTTATATCTGCTTACTCAGATGGGAAATTGAAGAATATAAGTTCAATGTATTAACATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGgtaaccacagataagtggatgaatattattgatatgggttatgtgattgcatcaaggtatttctaagcaatggttgtctcatgttgtcaacaactttgttatggtcaacacattgtgattatcaagcaaaacagtggcctactccttatattagttgaatgtaccagtatactaattacatgaggttgatcacacaacatgttgatttaagagaagattgaacattttgttattgtttgaataacttacatagttatgacaacatggataatgcatgtaaCACTTTCTAATCATATTTGTATAATGAACACAAtgttttc

>Glyma.20g062200.3 sequence-type=transcript locus=Glyma.20g062200 ID=Glyma.20g062200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGgtaaccacagataagtggatgaatattattgatatgggttatgtgattgcatcaaggtataacgtcatccttgtttctctttctctccaacaaagcatgatacttttctctcttagaagtcaactactgagagatagttatgttcattgaattatatgtattggtcatgtgcatgacaatcattttgttcaggtatttctaagcaatggttgtctcatgttgtcaacaactttgttatggtcaacacattgtgattatcaagcaaaacagtggcctactccttatattagttgaatgtaccagtatactaattacatgaggttgatcacacaacatgttgatttaagagaagattgaacattttgttattgtttgaataacttacatagttatgacaacatggataatgcatgtaaCACTTTCTAATC

>Glyma.20g062200.4 sequence-type=transcript locus=Glyma.20g062200 ID=Glyma.20g062200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGgtaaccacagataagtggatgaatattattgatatgggttatgtgattgcatcaaggtatagcaatgaccatcctgtttgttaattttttttataacatgtgttatgaacatttgaatgtgtatttgtctttgtaataggtatttctaagcaatggttgtctcatgttgtcaacaactttgttatggtcaacacattgtgattatcaagcaaaacagtggcctactccttatattagttgaatgtaccagtatactaattacatgaggttgatcacacaacatgttgatttaagagaagattgaacattttgttattgtttgaataacttacatagttatgacaacatggataatgcatgtaaCACTTTCTAATC

Coding sequences of Glyma.20g062200

Limit To All Plant Sequences

>Glyma.20g062200.1 sequence-type=CDS polypeptide=Glyma.20g062200.1.p locus=Glyma.20g062200 ID=Glyma.20g062200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTAA

>Glyma.20g062200.2 sequence-type=CDS polypeptide=Glyma.20g062200.2.p locus=Glyma.20g062200 ID=Glyma.20g062200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTAA

>Glyma.20g062200.3 sequence-type=CDS polypeptide=Glyma.20g062200.3.p locus=Glyma.20g062200 ID=Glyma.20g062200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTAA

>Glyma.20g062200.4 sequence-type=CDS polypeptide=Glyma.20g062200.4.p locus=Glyma.20g062200 ID=Glyma.20g062200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAAGTTGCATTTTGTTTAGTAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTAA

Predicted protein sequences of Glyma.20g062200

Limit To All Plant Sequences

>Glyma.20g062200.1.p sequence-type=predicted peptide transcript=Glyma.20g062200.1 locus=Glyma.20g062200 ID=Glyma.20g062200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKVAFCLVESRADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTKAEYAMKLHVLHIYSKR*

>Glyma.20g062200.2.p sequence-type=predicted peptide transcript=Glyma.20g062200.2 locus=Glyma.20g062200 ID=Glyma.20g062200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKVAFCLVESRADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTKAEYAMKLHVLHIYSKR*

>Glyma.20g062200.3.p sequence-type=predicted peptide transcript=Glyma.20g062200.3 locus=Glyma.20g062200 ID=Glyma.20g062200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKVAFCLVESRADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTKAEYAMKLHVLHIYSKR*

>Glyma.20g062200.4.p sequence-type=predicted peptide transcript=Glyma.20g062200.4 locus=Glyma.20g062200 ID=Glyma.20g062200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKVAFCLVESRADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTKAEYAMKLHVLHIYSKR*

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