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Report for Sequence Feature Glyma.20g062000

Feature Type:gene_model
Chromosome:Gm20
Start:19384308
stop:19388288
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g062000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47650.1AT nudix hydrolase homolog 2 JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG0648 KOG Predicted NUDIX hydrolase FGF-2 and related proteins JGI N/AIEA
PTHR13994Panther NUDIX HYDROLASE RELATED JGI N/AIEA
PTHR13994:SF2Panther JGI N/AIEA
PF00293PFAM NUDIX domain JGI N/AIEA
PWY-5381SoyCyc9 pyridine nucleotide cycling (plants) Plant Metabolic Network ISS
GN7V-44283SoyCyc9-rxn NADH pyrophosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.20g062000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g062000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g06680 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g062000
>Glyma.20g062000.1 sequence-type=CDS polypeptide=Glyma.20g062000.1.p locus=Glyma.20g062000 ID=Glyma.20g062000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGATGAGTTCTAGAGCTAGTAAGCTTGTTTCTTCCTCCCTTTTGGCAGCTTCAAAATTGTTACTTAAATCTTCTTCTTCTGCTCCTCCACTTCAAACTACAGCTCTTGTTGGCTCAATGGTCCCTAAAGTTCAAGGCCCGAAGCACAGTTCTGGTTTCCCTAGATCATACATGTCAGCTACCTTAGCTTCTCTGGCCAAGGAAGAGGAAGTGCCAAGTAAAGGCATTAATACACTCAGAGCAATTGAAGACCAACATGGGGGAGTTATTGTAAACATTGAGAACCCTATGGATTCCTCAGTTTTCTCTTCTTTGCTTGAAGCTTCAATATCACAATGGAGGGAACAGGGAAAGAAGGGAGTGTGGATCAAGCTGCCCAGAGAACATTCAAATCTTGTGGATTCTGCAGTTAAGGCTGGATTCCGATTCCACCATGCTGAACCAGATTACTTGATGCTCGTGAATTGGATTCCCAATACTCCCGATACACTTCCTGCAAATGCTTCGCACCGCGTTGCTGTTGGTGCTTTTGTCATGAATGCCAATAGGGAGGTGCTTGTGGTTCAGGAGAGCAATGGCAGGTTTAGTGGCCAAGGAATCTGGAAGTTGCCTACCGGAGGCGTTGATGAAGGTGAAGATATTTGTACTGCTGCAGTTAGAGAAGTCAAAGAAGAGACAGGGATAGATACAAAGTTTGTGGAGGTCATAGCATTCAAGGAAAGGCATAAATCTTTCTTCCGAAAATCAGAGTTGTTCTTCATTTGCATGTTGCAACCTCATTCCTTTAAAATTCAGAGACAAGTTTCAGAAATTGAGGCAGCTCAGTGGATGGCAATTGAGGATTACATGGCCCAGCCTTTTGTCCGAGAAAATGAGCTATTTGACTTTCTTACCAAAATAGGGTTATCAAAATTTAATGGCAAATACAGTGGCTTTTCCACCGTACTCTCTAGCACTTCCTCTTGCAAGAAATCTTACTTTTACTTCAACAACAACGACGCTGGTCACATTTAG
Predicted protein sequences of Glyma.20g062000
>Glyma.20g062000.1.p sequence-type=predicted peptide transcript=Glyma.20g062000.1 locus=Glyma.20g062000 ID=Glyma.20g062000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMMSSRASKLVSSSLLAASKLLLKSSSSAPPLQTTALVGSMVPKVQGPKHSSGFPRSYMSATLASLAKEEEVPSKGINTLRAIEDQHGGVIVNIENPMDSSVFSSLLEASISQWREQGKKGVWIKLPREHSNLVDSAVKAGFRFHHAEPDYLMLVNWIPNTPDTLPANASHRVAVGAFVMNANREVLVVQESNGRFSGQGIWKLPTGGVDEGEDICTAAVREVKEETGIDTKFVEVIAFKERHKSFFRKSELFFICMLQPHSFKIQRQVSEIEAAQWMAIEDYMAQPFVRENELFDFLTKIGLSKFNGKYSGFSTVLSSTSSCKKSYFYFNNNDAGHI*






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